RetrogeneDB ID: | retro_sbic_27 | ||
Retrocopylocation | Organism: | Sorghum (Sorghum bicolor) | |
Coordinates: | 3:11199020..11200358(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | Sb03g010340 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Sb04g028050 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 57.97 % |
Parental protein coverage: | 94.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | ARMVVTRAAASSP--KLPNGRRLRVAVVGGGPAGGAAAEALAKGGVETVLIERKMDNCKPCGGAIPLCMV |
AR......A........P..R.LRVAVVGGGPAG..AAEALA..G..T.L.ER.....KPCGGAIPLCM. | |
Retrocopy | ARIMISCSATTTTTSSSPSARPLRVAVVGGGPAGASAAEALASAGARTFLLERSPAGAKPCGGAIPLCML |
Parental | SEFDLPLDLVDRKVRKMKMISPSNVAVDIGRTLAPHEYIGMVRREVLDAYLRSRAQSAGAEVVNGLFLRY |
.EF..P.DLVDR.V..M...SPSN.A.D..R.L.P...I.M.RREVLD..LR.RA..AGAE.V.GL.... | |
Retrocopy | DEFAIPRDLVDRRVTRMRVVSPSNLAADFSRALPPGAHIPMLRREVLDSFLRRRAAEAGAELVPGLVTSL |
Parental | EAPKEPNGSYVVHYNHYDSSNGKIGGEKRSFEVDAIVGADGANSRVAKDMGAGDYEYAIAFQERVKIPDD |
..P..P...Y.V...HY.SS....G......EVDAIVGADGANSRVA...GAGDY..AIAFQER...PD. | |
Retrocopy | SLPAGPADPYLV---HYISSSSPEGAGRGVLEVDAIVGADGANSRVAREVGAGDYTTAIAFQERIRLPDA |
Parental | KMVYYEERAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKADIKKFQAATRLRAKDKIEGGKIIRVEA |
.M.YY...AEMYVG.DVSPDFYGWVFPKCDHVAVGTGTV..K..IK..Q...R.RA..KI.GG....VEA | |
Retrocopy | AMGYYDDLAEMYVGGDVSPDFYGWVFPKCDHVAVGTGTVAAKPEIKRLQSGIRARAGPKIAGGRVVKVEA |
Parental | HPIPEHPRPKRVSGRVTLVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVAGSANGTRMVEESDLRKYLAE |
HPIPEHPRP.RV.GRV.LVGDAAGYVT.CSGEGIYFAAKSGR.C..A.....A......E....R.YL.. | |
Retrocopy | HPIPEHPRPRRVVGRVALVGDAAGYVTRCSGEGIYFAAKSGRLCGQAMAEEWARTGAVTEAGLRRGYLRR |
Parental | FDRLYWPTYKVLDILQKVFYRSNAAREAFVEMCADDYVQKMTFDSYLYKRVVPGNPLDDIKLAVNTIGSL |
.D.........LD.LQ.VFY..NA.REA.VEMCAD.YVQ..TF.SYLYKR.VPG.P..D..L...T..S. | |
Retrocopy | WDDEFLLMFRFLDLLQRVFYGGNAGREALVEMCADEYVQRRTFESYLYKRMVPGEPWGDLRLLWRTVASM |
Parental | VRATALRREMEKV |
VR.....RE.E.. | |
Retrocopy | VRCGVIGREVERL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Brachypodium distachyon | BRADI3G59430 | 1 retrocopy | |
Zea mays | GRMZM2G105644 | 1 retrocopy | |
Oryza meridionalis | OMERI02G30980 | 1 retrocopy | |
Oryza nivara | ONIVA06G04710 | 1 retrocopy | |
Oryza punctata | OPUNC02G29860 | 1 retrocopy | |
Oryza rufipogon | ORUFI02G34000 | 1 retrocopy | |
Oryza sativa japonica | OS02G0744900 | 1 retrocopy | |
Sorghum bicolor | Sb04g028050 | 1 retrocopy |
retro_sbic_27 ,
|
Triticum aestivum | Traes_6DL_0FF72D765 | 1 retrocopy |