RetrogeneDB ID: | retro_sbic_34 | ||
Retrocopylocation | Organism: | Sorghum (Sorghum bicolor) | |
Coordinates: | 10:51378754..51379222(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | Sb10g023010 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Sb07g014940 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 52.55 % |
Parental protein coverage: | 96.48 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | GPIRQDWEPVVVRKKAPTAAAKKDEKAVNAARRAGAEIETMKKYNAGTNKAASSGTSLNTKRLDDDTENL |
G.I.QDWEPVV.R...P.AA..K..KAVN.A.R.GA..ET..K..AGTNK...S.T......LD..TE.. | |
Retrocopy | GNITQDWEPVVLRRTKPKAADLKSAKAVNQALRSGAAVETVRKSAAGTNKHFASTTVAPARKLDETTEPA |
Parental | AHERVPSDLKKNLMQARLDKKMTQAQLAQMINEKPQVIQEYESGKAIPNQQIIGKLERALGTKLRGK |
A.ERV..........AR..K...QA.LA..INE..QV.QEYESGKA.P.Q....K.ERAL..KLRGK | |
Retrocopy | AVERVAAEVRAAIQKARVAKGWSQAELAKRINERAQVVQEYESGKAAPAQAVLAKMERALEVKLRGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Medicago truncatula | MTR_2g084220 | 1 retrocopy | |
Oryza brachyantha | OB08G20790 | 1 retrocopy | |
Oryza barthii | OBART08G12410 | 1 retrocopy | |
Oryza glumaepatula | OGLUM08G13370 | 1 retrocopy | |
Oryza meridionalis | OMERI08G10430 | 1 retrocopy | |
Oryza nivara | ONIVA08G13070 | 1 retrocopy | |
Oryza punctata | OPUNC08G11340 | 1 retrocopy | |
Oryza glaberrima | ORGLA08G0109300 | 1 retrocopy | |
Oryza rufipogon | ORUFI08G14100 | 1 retrocopy | |
Oryza sativa japonica | OS08G0366100 | 1 retrocopy | |
Populus trichocarpa | POPTR_0001s40090 | 1 retrocopy | |
Physcomitrella patens | PP1S96_94V6 | 1 retrocopy | |
Prunus persica | PRUPE_ppa013074mg | 1 retrocopy | |
Sorghum bicolor | Sb07g014940 | 1 retrocopy |
retro_sbic_34 ,
|
Arabidopsis lyrata | scaffold_503053.1 | 1 retrocopy | |
Solanum lycopersicum | Solyc10g007350.2 | 1 retrocopy | |
Theobroma cacao | TCM_001730 | 1 retrocopy | |
Vitis vinifera | VIT_12s0028g02020 | 1 retrocopy |