RetrogeneDB ID: | retro_shar_297 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841253.1:363115..363842(-) | ||
Located in intron of: | ENSSHAG00000007782 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPDL | ||
Ensembl ID: | ENSSHAG00000013616 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein D-like [Source:HGNC Symbol;Acc:5037] |
Percent Identity: | 52.17 % |
Parental protein coverage: | 66.13 % |
Number of stop codons detected: | 9 |
Number of frameshifts detected | 4 |
Parental | HFKSGSIQRAAAATPSPRHLPPADSPAAMEDVNEYSNMEEF-AEGSKINASKNQQDDGKMFIGGLSWDTS |
HFKS..I..A...T..P.HLP.ADSPA...D.NE.S....F.AEGSKI...KN.QD..K.F.G.LSWDTS | |
Retrocopy | HFKSSFI*TAIIVTLFP*HLPSADSPAI*GDMNE*SSI-DF>AEGSKISMNKNTQDLAKIFFGRLSWDTS |
Parental | KKDLTEYLSRFGEVVDCTIKTDPVTGRSRGFGFVLFKDAASVDKVLELKEHKLDGKLIDPKRAKALKGKE |
KK.L..Y.S.FG.VV...IK...VTGRS..FGFVLF....S.D.V.E.KE...D.K.ID...AKALK... | |
Retrocopy | KKELINYFSCFGKVVGYIIKMNLVTGRS*QFGFVLFRHSLSADRVQEFKENIEDSKWIDF*MAKALK**D |
Parental | P-PKKVFVGGLSPDTSEEQIKEYFGAFGEIENIELPMDTK-TNERRGFCFITYTDEEP-VKKLLENRYHQ |
P.P.K...G.....TSE..IK.YF..F...EN....M..K..N..R.F.FITY.DE.....KLLENRYHQ | |
Retrocopy | PHPPKKYFG---INTSE*LIKKYFRTFDKTENVGFSMHKK>VNKKR-FYFITYIDEKA>LMKLLENRYHQ |
Parental | IGSGKCEI-KVAQPKEVYRQQQQQQKGGRGAAAGGRGGTRGRG |
I..GKC.I.K...PKE...QQQ...KG..G.AAGG.....G.G | |
Retrocopy | IDYGKCTI>KIRHPKEICKQQQ---KGRTGVAAGGLYDITGQG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000003887 | 7 retrocopies | |
Monodelphis domestica | ENSMODG00000011916 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000002501 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000013312 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013616 | 3 retrocopies |
retro_shar_297 , retro_shar_527, retro_shar_625,
|
Sarcophilus harrisii | ENSSHAG00000018255 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013979 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002817 | 7 retrocopies |