Parental gene: | HNRNPDL, ENSSHAG00000013616 |
| Aliases: | None |
| Description: | heterogeneous nuclear ribonucleoprotein D-like [Source:HGNC Symbol;Acc:5037] |
| Organism: | Tasmanian devil (Sarcophilus harrisii) |
| Coordinates: | GL864752.1:1274891..1278214(-) |
>ENSSHAG00000013616
CCGTCGCTGAGTTCCGGCTCCGCCCGGCAGGGGGCGCGCCGAGCGCCGCGCCACGTCACCGCCCCCCAGCCCTCCCGATT
GGCGGGCGGGGCGTCTATAAAGGGAGGGCGCAGGCGGCGCCCGGATCTCTTCCGCCGCCATTTTAAATCCGGCTCCATAC
AACGCGCCGCCGCTGCGACTCCCTCTCCGCGCCACCTGCCCCCGGCCGACAGCCCCGCCGCCATGGAGGATGTGAACGAG
TACAGCAACATGGAGGAGTTCGCCGAGGGCTCCAAAATCAACGCGAGCAAGAACCAGCAGGACGACGGTAAAATGTTTAT
TGGAGGGCTAAGCTGGGATACGAGCAAGAAAGATCTCACTGAATACCTGTCTCGTTTTGGAGAGGTTGTAGACTGCACAA
TTAAAACAGATCCCGTCACGGGAAGATCGAGGGGATTCGGATTTGTGCTTTTCAAAGATGCGGCCAGTGTCGATAAGGTC
TTGGAACTTAAAGAACACAAGCTGGACGGCAAGTTGATAGACCCCAAAAGGGCTAAAGCTTTAAAGGGAAAGGAGCCCCC
CAAAAAAGTATTTGTCGGCGGACTGAGCCCAGATACGTCTGAAGAGCAAATCAAAGAATATTTCGGAGCGTTTGGAGAGA
TTGAAAATATTGAACTTCCTATGGACACAAAAACAAATGAAAGAAGAGGATTTTGTTTTATCACATATACAGATGAAGAA
CCAGTAAAGAAATTATTAGAAAACAGATATCATCAGATTGGTTCTGGGAAGTGTGAAATCAAAGTTGCCCAACCCAAAGA
GGTATACAGGCAGCAACAGCAACAACAGAAAGGAGGGAGGGGCGCTGCAGCTGGCGGACGAGGTGGGACTAGGGGTCGTG
GCCGAGGTCAGGGCCAAAACTGGAACCAAGGATTTAATAACTATTATGATCAAGGATATGGAAATTACAATAGTGCCTAT
GGTGGTGATCAAAACTATAGTGGCTATGGCGGATATGATTATACTGGGTATAACTATGGGAACTATGGATATGGACAGGG
ATATGCAGACTACAGTGGTCAACAAAGCACGTATGGCAAAGCATCCCGAGGAGGTGGTAATCACCAAAACAATTACCAGC
CATATTAA
CCGTCGCTGAGTTCCGGCTCCGCCCGGCAGGGGGCGCGCCGAGCGCCGCGCCACGTCACCGCCCCCCAGCCCTCCCGATT
GGCGGGCGGGGCGTCTATAAAGGGAGGGCGCAGGCGGCGCCCGGATCTCTTCCGCCGCCATTTTAAATCCGGCTCCATAC
AACGCGCCGCCGCTGCGACTCCCTCTCCGCGCCACCTGCCCCCGGCCGACAGCCCCGCCGCCATGGAGGATGTGAACGAG
TACAGCAACATGGAGGAGTTCGCCGAGGGCTCCAAAATCAACGCGAGCAAGAACCAGCAGGACGACGGTAAAATGTTTAT
TGGAGGGCTAAGCTGGGATACGAGCAAGAAAGATCTCACTGAATACCTGTCTCGTTTTGGAGAGGTTGTAGACTGCACAA
TTAAAACAGATCCCGTCACGGGAAGATCGAGGGGATTCGGATTTGTGCTTTTCAAAGATGCGGCCAGTGTCGATAAGGTC
TTGGAACTTAAAGAACACAAGCTGGACGGCAAGTTGATAGACCCCAAAAGGGCTAAAGCTTTAAAGGGAAAGGAGCCCCC
CAAAAAAGTATTTGTCGGCGGACTGAGCCCAGATACGTCTGAAGAGCAAATCAAAGAATATTTCGGAGCGTTTGGAGAGA
TTGAAAATATTGAACTTCCTATGGACACAAAAACAAATGAAAGAAGAGGATTTTGTTTTATCACATATACAGATGAAGAA
CCAGTAAAGAAATTATTAGAAAACAGATATCATCAGATTGGTTCTGGGAAGTGTGAAATCAAAGTTGCCCAACCCAAAGA
GGTATACAGGCAGCAACAGCAACAACAGAAAGGAGGGAGGGGCGCTGCAGCTGGCGGACGAGGTGGGACTAGGGGTCGTG
GCCGAGGTCAGGGCCAAAACTGGAACCAAGGATTTAATAACTATTATGATCAAGGATATGGAAATTACAATAGTGCCTAT
GGTGGTGATCAAAACTATAGTGGCTATGGCGGATATGATTATACTGGGTATAACTATGGGAACTATGGATATGGACAGGG
ATATGCAGACTACAGTGGTCAACAAAGCACGTATGGCAAAGCATCCCGAGGAGGTGGTAATCACCAAAACAATTACCAGC
CATATTAA
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Dasypus novemcinctus | ENSDNOG00000003887 | ortholog_one2one | 7 retrogenes | |
| Monodelphis domestica | ENSMODG00000011916 | ortholog_one2many | 6 retrogenes | |
| Otolemur garnettii | ENSOGAG00000002501 | possible_ortholog | 4 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000013312 | within_species_paralog | 1 retrogene | |
| Sarcophilus harrisii | ENSSHAG00000018255 | other_paralog | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000013979 | possible_ortholog | 1 retrogene | |
| Tupaia belangeri | ENSTBEG00000002817 | ortholog_one2one | 7 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_shar_297 | 52.17 | 66.13 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_shar_527 | 60.71 | 58.13 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_shar_625 | 59.48 | 60.80 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSSHAG00000013616 retrocopies