RetrogeneDB ID: | retro_shar_527 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL849809.1:571537..572200(+) | ||
Located in intron of: | ENSSHAG00000009039 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPDL | ||
Ensembl ID: | ENSSHAG00000013616 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein D-like [Source:HGNC Symbol;Acc:5037] |
Percent Identity: | 60.71 % |
Parental protein coverage: | 58.13 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 3 |
Parental | DKVLELKEHKLDGKLIDPKRAKALKGKEPP-KKVFVGGLSPDTSEEQIK---EYFGAFGEIENIELPMDT |
DKVLE.KEHKL..KLID.KRA..LKGK.PP.KK.FV.G.S...SEEQIK...EY...FG....I.L...T | |
Retrocopy | DKVLEFKEHKLGNKLIDHKRARVLKGKDPP>KKIFVSGMSSIMSEEQIKIILEYLERFGKSTKIVLFLRT |
Parental | KTNERRGFCFITYTDEEPVKK-LLENRYHQIGSGKCEIKVAQPKEV-YRQQQQQQKGGRGAAAGGRGGTR |
......GF.FITYTDE......LLENRYHQIGSGKCEI.......V...QQ.Q..K.GRG.AAG.R.G.R | |
Retrocopy | QK*M*KGFYFITYTDENQXXX>LLENRYHQIGSGKCEITIQRGIQV>QQQQ-QR*KHGRGVAAGNRDGSR |
Parental | GRGRGQGQNWNQGFNNYYDQGYGNYNSAYGGDQNYSGYGGYDYTGYNYGNYGYGQGYADYSGQQSTYGKA |
..G.GQGQNWNQ.FNNYYD.G.GNYN.AY..D..Y....GYDYTGYNY.NYGY...YA.YS.QQ..Y.KA | |
Retrocopy | NHG*GQGQNWNQEFNNYYD*GCGNYNHAYRSDKKYRDNDGYDYTGYNYANYGYRGKYANYSSQQNMYSKA |
Parental | SRGGGNHQNNYQPY |
...G.N.QNNYQPY | |
Retrocopy | FQWGDNYQNNYQPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dasypus novemcinctus | ENSDNOG00000003887 | 7 retrocopies | |
Monodelphis domestica | ENSMODG00000011916 | 6 retrocopies | |
Otolemur garnettii | ENSOGAG00000002501 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000013312 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013616 | 3 retrocopies |
retro_shar_297, retro_shar_527 , retro_shar_625,
|
Sarcophilus harrisii | ENSSHAG00000018255 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000013979 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000002817 | 7 retrocopies |