RetrogeneDB ID: | retro_shar_364 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL841496.1:1068773..1069059(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ARF3 | ||
Ensembl ID: | ENSSHAG00000003635 | ||
Aliases: | None | ||
Description: | ADP-ribosylation factor 3 [Source:HGNC Symbol;Acc:654] |
Percent Identity: | 64.95 % |
Parental protein coverage: | 51.34 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 1 |
Parental | LDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNI-SFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVD |
.DA..KTT..YK.KLG.IVTTI.TI.F.VETVE.....SF..WDVG.QDK..P.W.HYFQN.QGLIFVVD | |
Retrocopy | VDAEEKTTV*YKPKLGKIVTTITTIDFIVETVEXXXX>SFMMWDVGIQDKV*PIWHHYFQNIQGLIFVVD |
Parental | SNDRERVNEAREELMRMLAEDELRDAV |
SND.E.VNE...ELMRM..ED.LR... | |
Retrocopy | SND*E*VNEI-QELMRMMVEDKLREVI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000008240 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000025074 | 1 retrocopy | |
Ciona savignyi | ENSCSAVG00000007011 | 1 retrocopy | |
Homo sapiens | ENSG00000134287 | 1 retrocopy | |
Latimeria chalumnae | ENSLACG00000019009 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000004207 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005072 | 7 retrocopies | |
Microcebus murinus | ENSMICG00000017545 | 1 retrocopy | |
Monodelphis domestica | ENSMODG00000013804 | 1 retrocopy | |
Mus musculus | ENSMUSG00000051853 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000017859 | 2 retrocopies | |
Petromyzon marinus | ENSPMAG00000000531 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000033155 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000048089 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000003635 | 2 retrocopies |
retro_shar_25, retro_shar_364 ,
|
Sarcophilus harrisii | ENSSHAG00000014599 | 3 retrocopies | |
Tetraodon nigroviridis | ENSTNIG00000011685 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000004698 | 1 retrocopy |