RetrogeneDB ID: | retro_shar_826 | ||
Retrocopylocation | Organism: | Tasmanian devil (Sarcophilus harrisii) | |
Coordinates: | GL867596.1:170739..171330(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | TRA2B | ||
Ensembl ID: | ENSSHAG00000002437 | ||
Aliases: | None | ||
Description: | transformer 2 beta homolog (Drosophila) [Source:HGNC Symbol;Acc:10781] |
Percent Identity: | 77. % |
Parental protein coverage: | 69.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | RSRSRSYSRDYR--RRHSHSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADV |
.SRSRSY.RDYR..RR...SHSP..TRRRH.GNR.NPDPNCCLGVFGLSLYTTERDLR..F.KYGPI..V | |
Retrocopy | QSRSRSYGRDYREYRRRRPSHSPLATRRRHLGNRSNPDPNCCLGVFGLSLYTTERDLRQIFTKYGPISHV |
Parental | SIVYDQQSRRSRGFAFVYFEKNGSAKKAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSR |
SIVYDQQSRRSRGFAFVYFE....AKKAKER..G.ELDGRRIRVDFSITKRPHTPTPGIYMGRPTY...R | |
Retrocopy | SIVYDQQSRRSRGFAFVYFENVEEAKKAKERVDGIELDGRRIRVDFSITKRPHTPTPGIYMGRPTY--NR |
Parental | RRDYYDRGYDRGYDDRDYYSRSYRGGGGG----GGG-WRAAQDRDQIYRRRSPSPYYSRG |
RRDY..R.YDRGY..RDYY.RSYRG..GG....GGG.WR..QDR...YRRR.PSP.YSRG | |
Retrocopy | RRDYHERPYDRGY-ERDYYNRSYRGVSGGISGGGGGSWRSVQDREVVYRRRTPSPRYSRG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Rattus norvegicus | ENSRNOG00000001783 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002437 | 2 retrocopies |
retro_shar_684, retro_shar_826 ,
|
Tarsius syrichta | ENSTSYG00000000388 | 1 retrocopy |