RetrogeneDB ID:

retro_tsyr_1632

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_52142:5441..5840(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSTSYG00000000388
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_tsyr_1632
ATGAGTAATGTAGTGGAGAACAACTTTGAGGGCAGAGAGTCTCGCTCTCAGTCAAAATCTCCAAAGGGAACTCCTGCTCA
TGTAAAATCAGAGAACAGGCCAGAATCTTGTAGTCCATCAAGAGTTTCCAAACACTCTGAATCCCATCCTCAATCAAGAT
CAAAATCTAGGTTGAGGTCAAGGAGGCATTCTCATGGACATTACACTCGGTCCAGATCCCACTCTCTCTCTCATGTAAGA
TGATCTCAAAGTAGATCATACACACCAGAATACCAACGATGGAAGAGCCAAAGTTATTTTCCAATATGGAACTGGAGAAG
ATATACAGGCAGCAGGGCAAATCCAGATCCCAACACTTGTCTTGAAGTGTTTGGCCTCAGTTTGTACATAATGGAGAGA

ORF - retro_tsyr_1632 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 75.94 %
Parental protein coverage: 61.86 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTR
MS.V.ENNFEGRESRSQSKSP.GTPA.VKSE.R..S.SPSRVSKHSESH..SRSKSR.RSRRHSH..YTR
RetrocopyMSNVVENNFEGRESRSQSKSPKGTPAHVKSENRPESCSPSRVSKHSESHPQSRSKSRLRSRRHSHGHYTR
ParentalSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGXXANPDPNTCLGVFGLSLYTTER
SRSHS.SH.R.S.SRSYTPEY.R..S.S..P..N.RR.TG..ANPDPNTCL.VFGLSLY..ER
RetrocopySRSHSLSHVR*SQSRSYTPEYQRWKSQSYFPIWNWRRYTGSRANPDPNTCLEVFGLSLYIMER

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1632 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 15 parental genes, and 34 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000016972 retrocopies
Canis familiaris ENSCAFG000000133452 retrocopies
Cavia porcellus ENSCPOG000000063131 retrocopy
Microcebus murinus ENSMICG000000106113 retrocopies
Myotis lucifugus ENSMLUG000000057812 retrocopies
Mustela putorius furoENSMPUG000000031571 retrocopy
Mus musculus ENSMUSG000000228586 retrocopies
Ochotona princeps ENSOPRG000000079902 retrocopies
Rattus norvegicus ENSRNOG000000017834 retrocopies
Sarcophilus harrisii ENSSHAG000000024372 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000067202 retrocopies
Tupaia belangeri ENSTBEG000000159271 retrocopy
Tarsius syrichta ENSTSYG00000000388 1 retrocopy
retro_tsyr_1632 ,
Tarsius syrichta ENSTSYG000000086704 retrocopies
Tarsius syrichta ENSTSYG000000095551 retrocopy



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