RetrogeneDB ID: | retro_tsyr_1632 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_52142:5441..5840(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000000388 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.94 % |
Parental protein coverage: | 61.86 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MSDVEENNFEGRESRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTR |
MS.V.ENNFEGRESRSQSKSP.GTPA.VKSE.R..S.SPSRVSKHSESH..SRSKSR.RSRRHSH..YTR | |
Retrocopy | MSNVVENNFEGRESRSQSKSPKGTPAHVKSENRPESCSPSRVSKHSESHPQSRSKSRLRSRRHSHGHYTR |
Parental | SRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNRRRHTGXXANPDPNTCLGVFGLSLYTTER |
SRSHS.SH.R.S.SRSYTPEY.R..S.S..P..N.RR.TG..ANPDPNTCL.VFGLSLY..ER | |
Retrocopy | SRSHSLSHVR*SQSRSYTPEYQRWKSQSYFPIWNWRRYTGSRANPDPNTCLEVFGLSLYIMER |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001697 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000013345 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000006313 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010611 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000005781 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003157 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022858 | 6 retrocopies | |
Ochotona princeps | ENSOPRG00000007990 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000001783 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002437 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006720 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000015927 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000388 | 1 retrocopy |
retro_tsyr_1632 ,
|
Tarsius syrichta | ENSTSYG00000008670 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000009555 | 1 retrocopy |