RetrogeneDB ID: | retro_rnor_2807 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:64609758..64610409(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Tra2b | ||
Ensembl ID: | ENSRNOG00000001783 | ||
Aliases: | Tra2b, Sfrs10, Srsf10 | ||
Description: | Transformer-2 protein homolog beta [Source:UniProtKB/Swiss-Prot;Acc:P62997] |
Percent Identity: | 71.49 % |
Parental protein coverage: | 74.31 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | SASRSGSAHGSGKSARHTPARSRSKEDSRRSRSKSRSRSESRSRSRRSSRRHYTRSRSRSRSHRRSRSRS |
..S.SGSA.GSGKSA.HTPARSRSKED...SRS.SRSRS..R..SRRSSRRHYTRSRSRS.S.R.SRSRS | |
Retrocopy | TGS*SGSAYGSGKSAQHTPARSRSKEDVMCSRSESRSRSKFRCISRRSSRRHYTRSRSRSGSQR*SRSRS |
Parental | ----YSRDYRRRHSHSHSPMSTRRRHV-GNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADV-SI |
....Y.R..........SPM...R.......AN.DPNCCLG.FGLSLYTTERDLREVFSKYGPIAD..SI | |
Retrocopy | YN*YYRRXXXXXXXXXXSPMVPQRCQI<SKGANSDPNCCLGMFGLSLYTTERDLREVFSKYGPIADD<SI |
Parental | VYDQQ-SRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRR |
VYD...SR.SRGFA.VYFENVDDAKEAKE.ANG.ELDG..IRV..SITKRPHTPTPGIYMGR.T.GSSR. | |
Retrocopy | VYDRS<SRWSRGFAVVYFENVDDAKEAKECANGLELDGC*IRVVSSITKRPHTPTPGIYMGRLTCGSSRC |
Parental | RDYYDRGYDRG |
.DYYDR.Y..G | |
Retrocopy | QDYYDRPYIGG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 40 .55 RPM |
SRP017611_kidney | 0 .00 RPM | 47 .24 RPM |
SRP017611_liver | 0 .00 RPM | 34 .02 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000001697 | 2 retrocopies | |
Canis familiaris | ENSCAFG00000013345 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000006313 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000010611 | 3 retrocopies | |
Myotis lucifugus | ENSMLUG00000005781 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000003157 | 1 retrocopy | |
Mus musculus | ENSMUSG00000022858 | 6 retrocopies | |
Ochotona princeps | ENSOPRG00000007990 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000000866 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000001783 | 4 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000002437 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000006720 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000015927 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000388 | 1 retrocopy |