RetrogeneDB ID: | retro_sita_49 | ||
Retrocopylocation | Organism: | Foxtail millet (Setaria italica) | |
Coordinates: | 4:5023789..5023993(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | Si007595m.g | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 54.41 % |
Parental protein coverage: | 76.4 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | PKKRMDKLDTVFSCPFCNHGSSVECRIDMKNLIGEASCRICQENFSTTVNALTEPIDIYSEWIDECER |
P.K...KL.T.F.CP.C....SVECRID.K....EASC..C....ST...ALTEPID.Y.EW.DE..R | |
Retrocopy | PRKARRKLGTAFRCPVCKRAESVECRIDPKRKVAEASCCGCEASYSTAADALTEPIDVYCEWVDERSR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Oryza sativa indica | BGIOSGA007878 | 1 retrocopy | |
Aegilops tauschii | F775_28085 | 1 retrocopy | |
Hordeum vulgare | MLOC_14907 | 3 retrocopies | |
Oryza barthii | OBART07G23140 | 1 retrocopy | |
Oryza glumaepatula | OGLUM07G23200 | 1 retrocopy | |
Oryza nivara | ONIVA07G23000 | 1 retrocopy | |
Oryza sativa japonica | OS07G0631100 | 1 retrocopy | |
Sorghum bicolor | Sb10g003710 | 1 retrocopy | |
Setaria italica | Si007595m.g | 2 retrocopies |
retro_sita_49 , retro_sita_50,
|
Triticum aestivum | Traes_1DL_84C83461E | 2 retrocopies |