RetrogeneDB ID: | retro_sscr_360 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 13:200801251..200801702(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | SKA1 | ||
Ensembl ID: | ENSSSCG00000004518 | ||
Aliases: | None | ||
Description: | spindle and kinetochore associated complex subunit 1 [Source:HGNC Symbol;Acc:28109] |
Percent Identity: | 78.81 % |
Parental protein coverage: | 58.82 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | CGQE-PTLKTILNKIGDEIIVVNELLNKLELEIEYQEQTNSSLQELCESLEEDYKDVEHLKENIPPHLPQ |
CGQE.PTLKT.LNKIGDE.IVVNE.LNKLELEIEYQEQTNSS..ELCESL.EDYKDVE..KENIPPH.PQ | |
Retrocopy | CGQE>PTLKTTLNKIGDEVIVVNEFLNKLELEIEYQEQTNSSHKELCESLKEDYKDVEYFKENIPPHSPQ |
Parental | VTVTQNVVNGSDLDPEEPAKVEESAPPKKPPKEQRNIKEMLFITSDEFNGIPAYMKSRLTYCQINDVIKE |
VTVTQNVVN.SDL.PEEPAK.EE...............EM.FITSDEF.GI.AYMKS.LTYCQINDVIKE | |
Retrocopy | VTVTQNVVNASDLGPEEPAKIEEYXXXXXXXXXXXXLREM*FITSDEFKGITAYMKSCLTYCQINDVIKE |
Parental | INKAVVGKYKI |
INKAVVGKYKI | |
Retrocopy | INKAVVGKYKI |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 0 .13 RPM |
SRP014902_testis | 0 .00 RPM | 0 .71 RPM |
SRP018288_heart | 0 .00 RPM | 0 .42 RPM |
SRP018288_kidney | 0 .00 RPM | 0 .59 RPM |
SRP018288_liver | 0 .00 RPM | 0 .64 RPM |
SRP018288_lung | 0 .00 RPM | 2 .75 RPM |
SRP018856_adipose | 0 .00 RPM | 0 .08 RPM |
SRP035408_brain | 0 .00 RPM | 0 .67 RPM |
SRP035408_liver | 0 .00 RPM | 4 .23 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000008555 | 2 retrocopies | |
Dasypus novemcinctus | ENSDNOG00000000190 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000005238 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000013388 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000004518 | 1 retrocopy |
retro_sscr_360 ,
|
Tursiops truncatus | ENSTTRG00000015539 | 1 retrocopy |