RetrogeneDB ID: | retro_sscr_742 | ||
Retrocopylocation | Organism: | Pig (Sus scrofa) | |
Coordinates: | 3:115385159..115385693(-) | ||
Located in intron of: | ENSSSCG00000025901 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GPS2 | ||
Ensembl ID: | ENSSSCG00000017940 | ||
Aliases: | None | ||
Description: | G protein pathway suppressor 2 [Source:HGNC Symbol;Acc:4550] |
Percent Identity: | 65.95 % |
Parental protein coverage: | 55.05 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | RQEEEEVDKMMEQKMKEEQ-ERRKKKEMEERMSLEETKEQILKLQEKLSALQEEKHQLFLQLKKVLHEEE |
..EEE....M..........E...KKE..E.MSLEETKEQILKLQE.LSAL.EEK.QLFLQLKKVLHEEE | |
Retrocopy | QEEEEVDKMMGKKMKEAQE<EKGEKKEIAEQMSLEETKEQILKLQEELSAL*EEKQQLFLQLKKVLHEEE |
Parental | K-RRRKEQSDLTTLTSAAYQQGLTVHTGTHLLSMQGSPGGHNRPGT-LMAADRAKQMFGPQVLTNRHYVG |
..R......DLTT..S.AYQQGLTVHTG.HLL.MQG.PGG..RPGT...AAD.AK.MFG.QVLT....VG | |
Retrocopy | R>RAKEQ-GDLTTVPSEAYQQGLTVHTGSHLLIMQGRPGGPKRPGT<PTAADKAKEMFGLQVLTSWY*VG |
Parental | SAAAFAGTPEH-GQFQGSPGGAYGTAQPPPHYGPT-QPAYSPSQQ |
SAAAF.GTPE..GQF.GSPG.AY.TAQP.PHYGP..QP.YSPS.. | |
Retrocopy | SAAAFTGTPEQ<GQFRGSPGSAY*TAQPSPHYGPS<QPPYSPSSE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP014902_placenta | 0 .00 RPM | 48 .85 RPM |
SRP014902_testis | 0 .00 RPM | 41 .59 RPM |
SRP018288_heart | 0 .00 RPM | 19 .62 RPM |
SRP018288_kidney | 0 .00 RPM | 34 .97 RPM |
SRP018288_liver | 0 .00 RPM | 21 .91 RPM |
SRP018288_lung | 0 .00 RPM | 87 .37 RPM |
SRP018856_adipose | 0 .00 RPM | 45 .63 RPM |
SRP035408_brain | 0 .00 RPM | 67 .30 RPM |
SRP035408_liver | 0 .00 RPM | 33 .79 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000016576 | 2 retrocopies | |
Equus caballus | ENSECAG00000010635 | 2 retrocopies | |
Homo sapiens | ENSG00000132522 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000001672 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000010645 | 2 retrocopies | |
Myotis lucifugus | ENSMLUG00000026169 | 1 retrocopy | |
Mus musculus | ENSMUSG00000023170 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000009364 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000023046 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000005052 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000017940 | 1 retrocopy |
retro_sscr_742 ,
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