RetrogeneDB ID: | retro_tbel_1055 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3715:256289..257067(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTBEG00000001510 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.47 % |
Parental protein coverage: | 96.23 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MVKVGVNGFGRIGRLVTRAAFNSGKV-DVVAINDPFIDLNYMVYMFQYDSTHGKFNGTVKAENGKLVING |
MVK..VN.FG..G..VTRAAFNSGK..DVV..ND.F.DLNY.VYMFQY.STH.K...TVKA.N.KLVIN. | |
Retrocopy | MVKARVNRFGHVGHRVTRAAFNSGKILDVVSLNDSFFDLNYRVYMFQYESTHDKLISTVKA*NQKLVINR |
Parental | KSITIFQERDPANIKWGDAGAEYVVESTGVFTTMEKAGAHLKGGAKRVIISAPSADAPMF---VMGVNHE |
KS.TIFQ..DPAN.KW.D.GAEYVVE..GVFTTMEK...HLK.GAKRVI.SA.SADAPMF.....G.NH. | |
Retrocopy | KSLTIFQ**DPANTKWSDGGAEYVVEVIGVFTTMEKSEDHLKDGAKRVIMSAHSADAPMFGHEHIGMNHK |
Parental | KY-DNSLKIVSNA-SCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPS-GKLWRDGRGAAQN |
KY.DNSLKI.S.A.SC.TNCLAP.......NF.IVEGLMTTVHAIT.TQKTVD..S.GKL..DGRGA.QN | |
Retrocopy | KYNDNSLKIISDA<SCRTNCLAPAPAKVINNFSIVEGLMTTVHAITTTQKTVDSCS<GKLYCDGRGAVQN |
Parental | IIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAYVWAG |
II.ASTG.A.AVGKV...LN..LTGM.F.VPT.NVSV.DLTC.LEKA....G | |
Retrocopy | IILASTGNAQAVGKVTLGLNKNLTGMVFHVPTHNVSVMDLTCLLEKASKYEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002325 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001510 | 27 retrocopies |
retro_tbel_1055 , retro_tbel_1149, retro_tbel_1315, retro_tbel_1359, retro_tbel_1519, retro_tbel_1684, retro_tbel_232, retro_tbel_2380, retro_tbel_2442, retro_tbel_2731, retro_tbel_2992, retro_tbel_3109, retro_tbel_3205, retro_tbel_3418, retro_tbel_3463, retro_tbel_3826, retro_tbel_3829, retro_tbel_393, retro_tbel_4036, retro_tbel_4094, retro_tbel_4310, retro_tbel_4377, retro_tbel_441, retro_tbel_4560, retro_tbel_4635, retro_tbel_4706, retro_tbel_480,
|
Tupaia belangeri | ENSTBEG00000008617 | 16 retrocopies |