RetrogeneDB ID: | retro_tbel_2486 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_111791:40826..41255(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDHS | ||
Ensembl ID: | ENSTBEG00000008617 | ||
Aliases: | None | ||
Description: | glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:HGNC Symbol;Acc:24864] |
Percent Identity: | 56.25 % |
Parental protein coverage: | 55.81 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | TATQKTVDGPSKKAWRDGRGAHQNIIPASTGAASAVGKVIPELKGKLTGMAFRVPTPDVSVVDLTCRLAQ |
TATQKT.D....K.W....G..QNII.AS...A.AVGKVIPEL..KLTGM.F...T..VSV.DLTC.L.. | |
Retrocopy | TATQKTEDNSLGKLWCHDCGTSQNIILASNDTAKAVGKVIPELNRKLTGMVFHTLTHNVSVMDLTCFLEK |
Parental | PTPYSAIKEAVKAAAKGPLAGILAYTEDQVVSTDFVGDTHSSIFDAKAGIALNDNFVKVISWYDNEYGYS |
.T.Y...K..VK....GPL.GIL.YT.DQV.S..F..DTHSS.F.A.A.I.LN..F...ISWYD....YS | |
Retrocopy | ATNYDN-KKVVK*ESQGPLKGILGYTKDQVISCNFNSDTHSSTFNAEADITLNAHFATLISWYDTKFDYS |
Parental | HRVV |
.RVV | |
Retrocopy | NRVV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |