RetrogeneDB ID: | retro_tbel_1685 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5465:90088..90597(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GAPDHS | ||
Ensembl ID: | ENSTBEG00000008617 | ||
Aliases: | None | ||
Description: | glyceraldehyde-3-phosphate dehydrogenase, spermatogenic [Source:HGNC Symbol;Acc:24864] |
Percent Identity: | 62.57 % |
Parental protein coverage: | 65.89 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 1 |
Parental | KVIHERFGIVEGLMTTVHSYTATQKTVDGPSKKAWRDGRGAHQNIIPASTGAASAVGKVIPELKGKLTGM |
KVI...FGI.EGLMTTVH..TATQKTVDGPS.K..RDG.G..QNIIPA.TG.A..V.KVIP.L..K.... | |
Retrocopy | KVIYNNFGIMEGLMTTVHAITATQKTVDGPSRKL*RDGHGTTQNIIPALTGTAKTVDKVIPGLNRKFASK |
Parental | AFRVPTPDVSVVDLTCR-LAQPTPYSAIKEAVKAAAKGPLAGILAYTEDQVVSTDFVGDTHSSIFDAKAG |
AF..PTP.VSVVDL.C..L.....Y..IK..VK....GPL.GIL..TEDQV.S.DF..DTHSS.FDA..G | |
Retrocopy | AFYIPTPNVSVVDLICH<LEKVVKYDDIKKVVK*LLHGPLKGILGFTEDQVISYDFNSDTHSSTFDARVG |
Parental | IALNDNFVKVISWYDNEYGYSHRVVDLIRYM |
I.L.D.F.K.ISWYDNE.GYS.RVV.L...M | |
Retrocopy | ISLSDHFIKFISWYDNEFGYSNRVVELMVHM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |