RetrogeneDB ID: | retro_tbel_1056 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_3716:41488..42147(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KRR1 | ||
Ensembl ID: | ENSTBEG00000008145 | ||
Aliases: | None | ||
Description: | KRR1, small subunit (SSU) processome component, homolog (yeast) [Source:HGNC Symbol;Acc:5176] |
Percent Identity: | 83.86 % |
Parental protein coverage: | 66.07 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 3 |
Parental | MAASSLNGPAAGTGKSEFRNQKSKVENRDESELLTVPDGWKEPAFSKEDNPRGLLEESSFAT-LFPKYRE |
MAASS.NG..AGTG.SEFRNQKSKVEN.DESELLTVPDGWKEP.FSKED.PRGLLEESSFAT.LFPKYRE | |
Retrocopy | MAASSQNGLIAGTGESEFRNQKSKVENGDESELLTVPDGWKEPGFSKEDGPRGLLEESSFAT<LFPKYRE |
Parental | AYLKECWPLVQKALNEHHVKATLDLIEGSMTVCTTKKTFDPYIIIRARDLIKLLARSVSFEQAVRILQDD |
AYLKECW.LV.K.LNEHHV.ATLDLI.GSMTVCTTKKTFD....IRARD..KLLARSVSFEQAV.ILQDD | |
Retrocopy | AYLKECWSLVKKILNEHHVHATLDLIKGSMTVCTTKKTFDLSVLIRARD*LKLLARSVSFEQAVQILQDD |
Parental | IACDIIKIGSL-VRNKERFVKRRQRLIGPKGSTLKALELLTNCYIMVQGNTVSAIGPFNGLKEVRKVVLD |
IACDI.K.G.L..RNKE.FVKRRQ.LI.PKGSTLKAL.LLTNCYIMVQG.TV.A.GPF.GLKEVRKVVLD | |
Retrocopy | IACDITKLGFL>ARNKEQFVKRRQWLIDPKGSTLKALKLLTNCYIMVQGDTVLAVGPFSGLKEVRKVVLD |
Parental | T-MKNIHPIYNIK |
...KNIHPIYNIK | |
Retrocopy | I<IKNIHPIYNIK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Ailuropoda melanoleuca | ENSAMEG00000006437 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000005665 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000009636 | 5 retrocopies | |
Monodelphis domestica | ENSMODG00000020451 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000008145 | 5 retrocopies |