RetrogeneDB ID: | retro_tbel_1613 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5248:93627..94127(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 62.92 % |
Parental protein coverage: | 95.68 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
MGKKQN.K......E.E.EE.VVEKVLD..VV.GKVE..LKWKGF.D.D.TWEPEENLDCP..I..FL.S | |
Retrocopy | MGKKQNGKSKK---EAEPEEFVVEKVLDPHVVNGKVEIFLKWKGFTDADDTWEPEENLDCPEFIEAFLNS |
Parental | QKTAHETDKTEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDS-SGELMFLMKWK |
QK...E.D...G.KRK..SDSE.....SK.KKK.....KPRGFARGL.PERI.G.TDS..GE.M.LM.W. | |
Retrocopy | QKAGKEKD---GTKRKSLSDSE--SDDSKSKKKGDAADKPRGFARGLDPERITGVTDS<QGEWMLLMRWE |
Parental | NSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSED |
..DEAD.V..KE.NVKCPQ.VI.FYEE.LTWHS.P... | |
Retrocopy | --DEADWVLEKETNVKCPQIVIAFYEENLTWHSCPEDE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |