RetrogeneDB ID: | retro_tbel_1655 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | GeneScaffold_5390:64341..64634(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSTBEG00000014931 | ||
Aliases: | None | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 52.34 % |
Parental protein coverage: | 54.59 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 6 |
Parental | GGKRKADSDSE-DKGEESKPKKKKEE-SEKPRGFARGLEPERIIG-ATDSSGELM-FLMKWKNSDEADLV |
G.....DSD.E...GEE....KKKE..S..P.G.A.GL.PE...G.ATDS...L...L.K.K...EAD.. | |
Retrocopy | GSNCNTDSDPE<SQGEETE-LKKKEH<S*EPPGCAGGLKPELLVG<ATDSRAKLL<VLLK*K-AKEADQG |
Parental | PAKEANVKCPQV-VISFYEERL-TWHSYPSEDDDKKD |
PAKEA.VKC.QV.V.SF..ERL..WHSY.SE...K.D | |
Retrocopy | PAKEASVKCLQV<VTSFCKERL>RWHSYSSEGNKKGD |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |