RetrogeneDB ID: | retro_tbel_2975 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_12567:60921..61508(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CLNS1A | ||
Ensembl ID: | ENSTBEG00000001316 | ||
Aliases: | None | ||
Description: | chloride channel, nucleotide-sensitive, 1A [Source:HGNC Symbol;Acc:2080] |
Percent Identity: | 76.38 % |
Parental protein coverage: | 99.48 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | LSWLDGSGLGFSLEYPTISLHAVSR--DL-NAYPREHLYVMVNARFGEESKESVDEEEEEDSDDDVEPIT |
LSW.D.S.LGFSLEYP.ISLHAVSR..DL.N.Y..EHLYVMVNARFGEESKESVDEEEEEDSDDDVEPIT | |
Retrocopy | LSWFDSSELGFSLEYPIISLHAVSRSRDL>NTYL*EHLYVMVNARFGEESKESVDEEEEEDSDDDVEPIT |
Parental | EFRFVPSDKSALEALFTAMCECQALH-PDPEDEDSDDYDGEEYDVEAHEQDRGDIPTFY-YEEGLSHLTA |
.F.FVP.DKSALEALFTAMCECQALH.PDPE..DSDDYDG..YDVEAH.Q..G..PTFY.Y.EGLSH.TA | |
Retrocopy | *FGFVPIDKSALEALFTAMCECQALH<PDPEAKDSDDYDGDKYDVEAHGQG*GNTPTFYTYGEGLSHFTA |
Parental | EG-QGTLERLKRMLSQSVKRQNIMDGVRTE-DIK-YEDGMEIDTTPTVAGQFEDADVDH |
EG....LERL..MLSQSV..Q..M.G.RT...I..YE.GMEIDTTP..AGQFED.DVDH | |
Retrocopy | EG<KAILERLEGMLSQSVSSQYNMAGFRTKVSIRDYENGMEIDTTPMLAGQFEDVDVDH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000004900 | 6 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000007254 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014927 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005260 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008188 | 1 retrocopy | |
Felis catus | ENSFCAG00000026321 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005935 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000024623 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000015944 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000024393 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000001316 | 1 retrocopy |
retro_tbel_2975 ,
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