Parental gene: | CLNS1A, ENSCAFG00000004900 |
| Aliases: | CLNS1A, ICLN |
| Description: | Canis lupus familiaris chloride channel, nucleotide-sensitive, 1A (CLNS1A), mRNA. [Source:RefSeq mRNA;Acc:NM_001003288] |
| Organism: | Dog (Canis familiaris) |
| Coordinates: | 21:21136930..21160703(+) |
>ENSCAFG00000004900
ATGAGCTTCCTCAAAAGTTTCCCGCCGCCCGGCTCGGCCGAGGGGCTTCGGCAGCAGCAGCCCGAGACCGAGGCCGTGCT
GAACGGCAAGGGCCTCGGCACCGGCACGCTCTACATCGCGGAGAGCCGCCTGTCTTGGTTAGATGGCTCTGGATTAGGAT
TCTCACTGGAATACCCCACCATTAGCTTGCATGCGGTGTCCAGGGACCTAAATGCCTATCCACGAGAGCATTTGTATGTT
ATGGTGAATGCTAAATTTGGAGAAGAATCAAAAGAATCTGTTGCTGAAGAAGAAGACAGTGATGATGATGTTGAACCTAT
TGCTGAATTTAGATTTGTGCCTAGTGATAAATCAGCATTGGAGGCAATGTTCACTGCAATGTGTGAATGCCAGGCTTTGC
ATCCTGATCCTGAGGATGAAGATTCAGATGATTACGATGGAGAAGAATATGATGTGGAAGCACATGAACAAGGGCAGGGG
GACATCCCTACATTTTATACCTATGAAGAAGGATTATCCCATTTAACAGCAGAAGGCCAAGCCACCTTGGAGAGATTAGA
AGGAATGCTTTCTCAGTCTGTGAGCAGCCAATATAACATGGCTGGAGTCCGGACAGAAGATTCAATCAGAGATTATGAAG
ATGGGATGGAGGTAGACACTACACCAACAGTTGCTGGACAGTTTGAGGATGCAGATGTTGATCACTGA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP012049_cerebellum | 22 .51 RPM |
| SRP017611_brain | 12 .54 RPM |
| SRP017611_kidney | 14 .66 RPM |
| SRP017611_liver | 3 .84 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Bos taurus | ENSBTAG00000019930 | possible_ortholog | 1 retrogene | |
| Choloepus hoffmanni | ENSCHOG00000007254 | ortholog_one2many | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000014927 | possible_ortholog | 1 retrogene | |
| Cavia porcellus | ENSCPOG00000005260 | possible_ortholog | 1 retrogene | |
| Dasypus novemcinctus | ENSDNOG00000008188 | ortholog_one2many | 1 retrogene | |
| Felis catus | ENSFCAG00000026321 | ortholog_one2one | 1 retrogene | |
| Homo sapiens | ENSG00000074201 | possible_ortholog | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000003091 | possible_ortholog | 1 retrogene | |
| Macropus eugenii | ENSMEUG00000005935 | ortholog_one2many | 4 retrogenes | |
| Myotis lucifugus | ENSMLUG00000024623 | ortholog_one2one | 2 retrogenes | |
| Mustela putorius furo | ENSMPUG00000015944 | ortholog_one2one | 1 retrogene | |
| Mus musculus | ENSMUSG00000025439 | possible_ortholog | 1 retrogene | |
| Nomascus leucogenys | ENSNLEG00000016699 | possible_ortholog | 2 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000024393 | possible_ortholog | 1 retrogene | |
| Pongo abelii | ENSPPYG00000003712 | possible_ortholog | 1 retrogene | |
| Sorex araneus | ENSSARG00000009460 | possible_ortholog | 2 retrogenes | |
| Ictidomys tridecemlineatus | ENSSTOG00000027980 | possible_ortholog | 3 retrogenes | |
| Tupaia belangeri | ENSTBEG00000001316 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cfam_255 | 60.50 | 100.00 | Please wait, loading  |
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| 2. | retro_cfam_327 | 95.36 | 100.00 | Please wait, loading |
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| 3. | retro_cfam_720 | 95.40 | 100.00 | Please wait, loading |
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| 4. | retro_cfam_727 | 92.80 | 100.00 | Please wait, loading |
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| 5. | retro_cfam_1112 | 97.20 | 90.64 | Please wait, loading |
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| 6. | retro_cfam_1448 | 94.66 | 87.66 | Please wait, loading |
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Download FASTA sequences of all ENSCAFG00000004900 retrocopies