RetrogeneDB ID: | retro_cfam_255 | ||
Retrocopylocation | Organism: | Dog (Canis familiaris) | |
Coordinates: | 1:35055184..35055884(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CLNS1A | ||
Ensembl ID: | ENSCAFG00000004900 | ||
Aliases: | CLNS1A, ICLN | ||
Description: | Canis lupus familiaris chloride channel, nucleotide-sensitive, 1A (CLNS1A), mRNA. [Source:RefSeq mRNA;Acc:NM_001003288] |
Percent Identity: | 60.5 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | MSFLKSFPPPGSAEGLRQQQPETEAVLNGKGLGTGTLYI-AESRLSWLDGSGLGFSLEYPTISLHAVSRD |
MSFLKSF..PG.A.GL.QQQ......L....L...TLY..A.S..SWL..SG.GF..EY.T.SLHAVSRD | |
Retrocopy | MSFLKSFLQPGLAGGL*QQQLGPTVMLHRQDLCASTLYM<AQSCMSWLVSSG*GFLVEYSTMSLHAVSRD |
Parental | LNAYPREHLYVMVNAKFGEESKESVAEE-EDSDDDVEPIAEFRFVPSDKSALEAMFTAMCECQALHPD-P |
LNA.P.E.L.V.VNA.FGE....S.A.E.EDSD...EPI..FRF.P..K.A..A.FTA..ECQAL.PD.. | |
Retrocopy | LNACPQEYLCVRVNATFGEDF*KSAADEKEDSDEGLEPIGKFRFFPHNKPAPRAAFTAVYECQALRPD<S |
Parental | EDEDSDDYDGEEYDVEAHEQGQGDIPTFYTYEEGLSHLTAEGQATLERLEGMLSQSVSSQYNMAGVRTED |
.D..SDDYD.E...VEA.EQGQG.........EGLSHLT.E.QATLER.EG.LS.SV..Q.NMAGV.T.D | |
Retrocopy | VDKESDDYDKEV*NVEAQEQGQGT--SLHFIHEGLSHLTMESQATLER*EGRLSPSVGGQHNMAGVWTKD |
Parental | SIRDYEDGMEVDTTPTVAGQFEDADVDH |
..RD.ED.MEVDT..TVAG.FEDADVDH | |
Retrocopy | TVRDKEDWMEVDTISTVAGKFEDADVDH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012049_cerebellum | 0 .08 RPM | 22 .51 RPM |
SRP017611_brain | 0 .08 RPM | 12 .54 RPM |
SRP017611_kidney | 0 .26 RPM | 14 .66 RPM |
SRP017611_liver | 0 .15 RPM | 3 .84 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000019930 | 1 retrocopy | |
Canis familiaris | ENSCAFG00000004900 | 6 retrocopies | |
Choloepus hoffmanni | ENSCHOG00000007254 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000014927 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000005260 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000008188 | 1 retrocopy | |
Felis catus | ENSFCAG00000026321 | 1 retrocopy | |
Homo sapiens | ENSG00000074201 | 2 retrocopies | |
Gorilla gorilla | ENSGGOG00000003091 | 1 retrocopy | |
Macropus eugenii | ENSMEUG00000005935 | 4 retrocopies | |
Myotis lucifugus | ENSMLUG00000024623 | 2 retrocopies | |
Mustela putorius furo | ENSMPUG00000015944 | 1 retrocopy | |
Mus musculus | ENSMUSG00000025439 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000016699 | 2 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000024393 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000003712 | 1 retrocopy | |
Sorex araneus | ENSSARG00000009460 | 2 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000027980 | 3 retrocopies | |
Tupaia belangeri | ENSTBEG00000001316 | 1 retrocopy |