RetrogeneDB ID: | retro_tbel_3201 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_13375:48211..49315(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | NT5C2 | ||
Ensembl ID: | ENSTBEG00000017707 | ||
Aliases: | None | ||
Description: | 5'-nucleotidase, cytosolic II [Source:HGNC Symbol;Acc:8022] |
Percent Identity: | 69.6 % |
Parental protein coverage: | 69.2 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 7 |
Parental | NKFIQRDDTERFYILNTLFNLPETYLLACLV-NF-FTNCPRYTSCETGFKDGDLFMSYRSMFQDV-RDAV |
NKFIQ.DDT.RFYILNTLFNLPETY.LACLV.NF.F.NCPRYTSCET.FKDGDLFMSY.SMFQ.V.R.AV | |
Retrocopy | NKFIQ*DDTRRFYILNTLFNLPETYRLACLV<NFIFPNCPRYTSCETEFKDGDLFMSYWSMFQVV<RYAV |
Parental | DWVHYKGSLKEKT-VENLEKYVVKDG--PLL--SMK-VGKVFLANSD-YKYTDKIMTYLFDFPHGPKPGS |
DWVH.KGSL.....VENLEK.VVKDG..PLL...MK..GKVFLA.....K.T.KI.TYLFDFPHG.KPGS | |
Retrocopy | DWVHDKGSLEXXXXVENLEKCVVKDGKLPLLLSQMKEIGKVFLATNS>TKCTGKIRTYLFDFPHGSKPGS |
Parental | SHRPWQSYFDLILVDARK-PLFFGEGTVLRQVDTKTGKLKIGTYTGPLQHGIVYSGGSSDT-ICDLLG-K |
SH.PWQSYFDLILVD..K......EGTVL.QV.TKTGKLKIGTYT.PLQHGIV.S.G.S....CDLLG.K | |
Retrocopy | SHQPWQSYFDLILVDVQKLXXXXXEGTVLHQVHTKTGKLKIGTYTDPLQHGIVCS-GGSSD>TCDLLGTK |
Parental | GKDILYIGDHID---IKSKKRQGWRTFLVIPELAQELHVWTDKSALFEELQSLDIFLAELYKHLDSSSNE |
GKDILYIGDHI.....KSKK.QGW.T.LVIPELAQELH.WTDKSAL.EELQ.L..FL.ELYKHLDSSSNE | |
Retrocopy | GKDILYIGDHIFGDILKSKKWQGW*TILVIPELAQELHIWTDKSALLEELQRLEVFLVELYKHLDSSSNE |
Parental | RPDISSIQRRIKKVTHDM-DMCYGMMGSLFRSGSRQTLFAS-QVMRYADLYAASFINLLYYP-FSYLFRA |
..DI..IQR.IKKVTHDM.DMCY.M.G......S.QTL......M.Y.DL..A..I.LLYYP.FSYLFR. | |
Retrocopy | CLDIALIQRHIKKVTHDM>DMCYRMTGVCSAVASLQTLVCQVKWM*YDDLNTAPVITLLYYP>FSYLFRV |
Parental | AHVLMPHESTVEHTH-VDINEMESP |
......HE....HT..VD..E.E.P | |
Retrocopy | PTSWRLHEIMGDHTN>VDFIEEEEP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000010354 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000004098 | 1 retrocopy | |
Microcebus murinus | ENSMICG00000012316 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000020179 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000017707 | 4 retrocopies |