RetrogeneDB ID: | retro_tbel_4413 | ||
Retrocopylocation | Organism: | Treeshrew (Tupaia belangeri) | |
Coordinates: | scaffold_81582:9494..10228(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTBEG00000003474 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.92 % |
Parental protein coverage: | 99.18 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | LNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGR |
LNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGR | |
Retrocopy | LNISFPATGCQKLIEVDDERKLRTFYEKRMATEVAADALGEEWKGYVVRISGGNDKQGFPMKQGVLTHGR |
Parental | VRLLLSKGHSCYRPRRTGE-KRKSVRGCTVDANLSILNSVIVKK-EKNIPGLTDTTVPRHLGPKRASRIP |
VRLLLSKGHSCYRPRRTGE.KRKSVRGC.VDANLSILN.VIVKK.EK.IPGLTDTTVPR.LGPKRASRI. | |
Retrocopy | VRLLLSKGHSCYRPRRTGERKRKSVRGCIVDANLSILNLVIVKKGEKDIPGLTDTTVPRRLGPKRASRIR |
Parental | KLFNLSKEDDVRQYVVRKPLNKEGKNPRTKAPKIQCLVTPCVLQHKRWHTALKKQRTKKNKEEAADYAQL |
KLFNLSKEDDV.QYVVRKPLNKEGK.PRTKAPKIQ.LVTP.VLQHKR...ALKKQRTKKNKEEAA.YA.L | |
Retrocopy | KLFNLSKEDDVHQYVVRKPLNKEGKKPRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKL |
Parental | LAKR-MKEAKEKSQEQ-TVKRRRL-SPLRASTSKSESS |
LAKR..KEAKEK.QEQ...KRRRL...LRASTSKSESS | |
Retrocopy | LAKR<TKEAKEKRQEQ<DSKRRRL>TSLRASTSKSESS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
EST ID | Start | End | Identity | Match | Mis-match | Score |
---|---|---|---|---|---|---|
CF526854 | 9565 | 9883 | 99.1 | 314 | 3 | 310 |