RetrogeneDB ID: | retro_tsyr_1061 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_29374:22886..23510(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | GPX6 | ||
Ensembl ID: | ENSTSYG00000000641 | ||
Aliases: | None | ||
Description: | glutathione peroxidase 6 (olfactory) [Source:HGNC Symbol;Acc:4558] |
Percent Identity: | 63.46 % |
Parental protein coverage: | 94.09 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 0 |
Parental | LFPLFLVGFAQQTLKPQNMKVDCNKEVTGTIYEYGALTLNGEEYIQFKQYAGKHVLFVNVATYUGLAAQY |
L..L.LVGFA.........K.DC...V.GTI.EYGALT..GEEYI.F.QYAGK.VLFVNVA.Y.GL..QY | |
Retrocopy | LLSLLLVGFAPPSHRQGKSKMDCHSGVRGTICEYGALTFDGEEYIPFEQYAGKYVLFVNVASY*GLMGQY |
Parental | PELNALQKELKNFDVIVLGFPCNQFGKQEPGTNSEILPGLKYVRPGGGFVPNFQLFEKGDVNGEKT-KVF |
.ELNALQ.EL.......LGFPCNQFGKQEPG.NSEILP.LKYVRP.G..VPNFQ..EKGDVN.EK..K.. | |
Retrocopy | VELNALQEELAPLGLVTLGFPCNQFGKQEPGENSEILPSLKYVRPSGHYVPNFQPLEKGDVNREKE*KFC |
Parental | TFLNNSCPPTSDLLGSSSQLFWEPMKVHDIRWNFEKFLVGPNGVPVKRWFHRAPVSTVKSDILDYLKQ |
TFL.N.C.PTS..LGS...LFWEP.K.HDI.WNFEK.LVGP.G..V.RW.H...VS.VK..I..Y... | |
Retrocopy | TFLKNPCLPTSEFLGSPDCLFWEPVKAHDICWNFEKLLVGPDGKLVMRWYHPTTVSNVKMGIPSYMRR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000007526 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000641 | 1 retrocopy |
retro_tsyr_1061 ,
|
Tarsius syrichta | ENSTSYG00000012413 | 2 retrocopies |