RetrogeneDB ID: | retro_tsyr_118 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | GeneScaffold_3185:20330..21083(+) | ||
Located in intron of: | ENSTSYG00000005331 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS4X | ||
Ensembl ID: | ENSTSYG00000003137 | ||
Aliases: | None | ||
Description: | ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424] |
Percent Identity: | 94.42 % |
Parental protein coverage: | 95.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MARGPKKHLKRVAAPKHWMLDKLTGVFAPRPST-PHKLRECLPLIIF-RNRLKYALTGDEVKKICMQRFI |
MA.GPKKHLK.VAAPKH.MLDKLTGVFAPRPST.PHKLRECL.LIIF.RNRL.YALTGDEVKKICMQRFI | |
Retrocopy | MAHGPKKHLKQVAAPKH*MLDKLTGVFAPRPSTGPHKLRECLTLIIFLRNRLTYALTGDEVKKICMQRFI |
Parental | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTKGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDT.GRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV | |
Retrocopy | KIDGKVRTDITYPAGFMDVISIDKTGENFRLIYDTRGRFAVHRITPEEAKYKLCKVRKIFVGTKGIPHLV |
Parental | THDARTIRYPDPLIKVNDTIQIDLEAGKITDFIKFDTGNLCMVTGGANL-RIGVITNRERHPGSFDVVHV |
THDARTIRYPDPLIKVNDTIQIDLEAGKITDFIKFDTGNLCMVTGGANL.RIGVITNRERHPGSFDVVHV | |
Retrocopy | THDARTIRYPDPLIKVNDTIQIDLEAGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHV |
Parental | KDAYGNSFATRLSNIFVIDKGNKPWISLPRGKGIRLTIAEE |
K.A.GN.FATRLSNIFVI.KGNKPWISLPRGKGIRLTIA.E | |
Retrocopy | KEANGNGFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAGE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000014601 | 1 retrocopy | |
Bos taurus | ENSBTAG00000018800 | 5 retrocopies | |
Canis familiaris | ENSCAFG00000017151 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000006337 | 3 retrocopies | |
Dipodomys ordii | ENSDORG00000008571 | 4 retrocopies | |
Equus caballus | ENSECAG00000010852 | 6 retrocopies | |
Homo sapiens | ENSG00000129824 | 1 retrocopy | |
Meleagris gallopavo | ENSMGAG00000009671 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000011685 | 5 retrocopies | |
Monodelphis domestica | ENSMODG00000011070 | 1 retrocopy | |
Mustela putorius furo | ENSMPUG00000005294 | 11 retrocopies | |
Otolemur garnettii | ENSOGAG00000011808 | 2 retrocopies | |
Pan troglodytes | ENSPTRG00000022470 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000003201 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000003137 | 16 retrocopies | |
Vicugna pacos | ENSVPAG00000010952 | 4 retrocopies |