Parental gene:

RPS4, ENSBTAG00000018800

Aliases:RPS4X, RPS4
Description:40S ribosomal protein S4 [Source:UniProtKB/Swiss-Prot;Acc:P79103]
Organism:Cow (Bos taurus)
Coordinates:X:83532033..83536488(+)


>ENSBTAG00000018800
ATGGCTCGGGGTCCCAAGAAGCACCTGAAACGCGTAGCAGCTCCAAAACATTGGATGCTGGATAAACTGACCGGTGTGTT
TGCCCCTCGTCCATCTACCGGCCCCCACAAGCTAAGGGAGTGTCTCCCCCTAATCATTTTCCTAAGGAATAGACTTAAGT
ATGCCCTAACTGGAGATGAAGTAAAGAAGATTTGCATGCAGCGTTTCATTAAGATCGATGGCAAAGTCCGCACAGATATA
ACCTACCCTGCTGGTTTTATGGATGTCATCAGCATTGATAAGACTGGAGAGAACTTTCGTTTGATCTATGACACCAAGGG
TCGCTTTGCTGTTCATCGTATTACACCTGAGGAGGCCAAGTATAAATTGTGCAAAGTAAGAAAGATATTTGTGGGAACAA
AAGGAATCCCTCATCTGGTAACCCATGATGCTCGTACCATCCGTTACCCTGATCCCCTCATCAAGGTGAATGATACCATT
CAGATTGACTTGGAGACTGGCAAGATTACTGATTTCATCAAATTTGACACTGGTAACCTGTGCATGGTGACTGGAGGTGC
TAACCTGGGAAGAATTGGTGTGATTACAAACCGGGAGAGGCATCCAGGTTCTTTTGATGTAGTTCATGTGAAAGATGCGA
ACGGCAACAGCTTTGCCACACGGCTCTCAAACATTTTCGTTATTGGCAAAGGCAACAAACCGTGGATCTCTCTTCCCCGT
GGAAAGGGTATTCGCCTTACTATTGCTGAGGAGAGAGATAAGAGATTGGCAGCCAAACAGAGCAGTGGATAA

Library Parental gene expression (RPM)
SRP017611_brain 108 .67 RPM
SRP017611_kidney 207 .75 RPM
SRP017611_liver 72 .56 RPM
ERP005899_muscle 950 .41 RPM
ERP005899_liver 46 .07 RPM
SRP030211_testis 45 .67 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014601 ortholog_one2many 1 retrogene
Canis familiaris ENSCAFG00000017151 possible_ortholog 2 retrogenes
Callithrix jacchus ENSCJAG00000004192 possible_ortholog 2 retrogenes
Cavia porcellus ENSCPOG00000006337 possible_ortholog 3 retrogenes
Dipodomys ordii ENSDORG00000008571 possible_ortholog 4 retrogenes
Equus caballus ENSECAG00000010852 possible_ortholog 6 retrogenes
Felis catus ENSFCAG00000012041 ortholog_one2one 11 retrogenes
Homo sapiens ENSG00000129824 possible_ortholog 1 retrogene
Homo sapiens ENSG00000198034 possible_ortholog 19 retrogenes
Loxodonta africana ENSLAFG00000002654 possible_ortholog 4 retrogenes
Macropus eugenii ENSMEUG00000007969 possible_ortholog 16 retrogenes
Meleagris gallopavo ENSMGAG00000009671 ortholog_many2many 1 retrogene
Microcebus murinus ENSMICG00000016606 possible_ortholog 58 retrogenes
Myotis lucifugus ENSMLUG00000011685 possible_ortholog 5 retrogenes
Macaca mulatta ENSMMUG00000003295 ortholog_one2one 7 retrogenes
Monodelphis domestica ENSMODG00000011070 possible_ortholog 1 retrogene
Mustela putorius furo ENSMPUG00000005294 possible_ortholog 11 retrogenes
Mus musculus ENSMUSG00000031320 possible_ortholog 13 retrogenes
Nomascus leucogenys ENSNLEG00000018121 possible_ortholog 25 retrogenes
Otolemur garnettii ENSOGAG00000011808 possible_ortholog 2 retrogenes
Procavia capensis ENSPCAG00000000761 possible_ortholog 3 retrogenes
Pongo abelii ENSPPYG00000020462 possible_ortholog 24 retrogenes
Pan troglodytes ENSPTRG00000022025 possible_ortholog 9 retrogenes
Pan troglodytes ENSPTRG00000022470 possible_ortholog 1 retrogene
Pteropus vampyrus ENSPVAG00000012882 possible_ortholog 21 retrogenes
Rattus norvegicus ENSRNOG00000003201 possible_ortholog 1 retrogene
Sus scrofa ENSSSCG00000012405 possible_ortholog 5 retrogenes
Ictidomys tridecemlineatus ENSSTOG00000028692 possible_ortholog 8 retrogenes
Tupaia belangeri ENSTBEG00000002918 ortholog_one2one 20 retrogenes
Tarsius syrichta ENSTSYG00000003137 possible_ortholog 16 retrogenes
Vicugna pacos ENSVPAG00000010952 ortholog_one2many 4 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_btau_33 99.24 100.00
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_btau_76 98.86 100.00
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_btau_119 98.48 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_btau_125 96.20 100.00
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_btau_146 95.06 100.00
Please wait, loading
Please wait, loading
Please wait, loading

Download FASTA sequences of all ENSBTAG00000018800 retrocopies