Parental gene:

RPS4X, ENSVPAG00000010952

Aliases:None
Description:ribosomal protein S4, X-linked [Source:HGNC Symbol;Acc:10424]
Organism:Alpaca (Vicugna pacos)
Coordinates:GeneScaffold_605:257286..272161(-)


>ENSVPAG00000010952
ATGGCTCGTGGTCCCAAGAAGCACCTGAAGCGTGTAGCAGCTCCAAAGCATTGGATGCTGGATAAACTGACCGGTGTGTT
TGCTCCTCGTCCATCTACTGGTCCCCACAAGCTGAGGGAATGTCTCCCCCTCATCATTTTCCTAAGGAACAGACTTAAGT
ATGCCTTAACAGGTGATGAAGTAAAAAAGATTTGCATGCAGCGTTTCATTAAGATTGATGGCAAGGTTCGCACTGATATA
ACCTATCCTGCTGGTTTTATGGATGTCATCAGCATTGACAAGACTGGAGAGAATTTCCGCCTGATCTATGATACCAAAGG
TCGCTTTGCTGTCCATCGTATTACACCTGAGGAAGCCAAGTACAAGTTGTGCAAAGTAAGAAAGATCTTTGTGGGCACAA
AAGGAATCCCTCATCTGGTGACCCATGATGCACGCACCATCCGCTACCCTGATCCCCTCATCAAGGTGAATGACACCATT
CAGATTGACTTGGAGACTGGCAAGATTACTGATTTCAACCTATGTATGGTGACTGGAGGTGCCAACCTGGGGAGAATTGG
TGTCATCACCAACAGAGAGAGACATCCTGGTTCTTTTGATGTAGTTCACGTGAAAGATGCCAACGGCAACAGCTTTGCCA
CCCGGCTGTCCAATATTTTCGTTATTGGCAAAGGCAACAAACCATGGATCTCTCTTCCCCGTGGAAAGGGTATCCGCCTT
ACCATTGCTGAGGAGAGAGACAAGAGACTGGCGGCCAAACAGAGCAGTGGATAA

Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000014601 ortholog_one2one 1 retrogene
Bos taurus ENSBTAG00000018800 ortholog_one2many 5 retrogenes
Canis familiaris ENSCAFG00000017151 ortholog_one2many 2 retrogenes
Callithrix jacchus ENSCJAG00000004192 ortholog_one2one 2 retrogenes
Cavia porcellus ENSCPOG00000006337 possible_ortholog 3 retrogenes
Dipodomys ordii ENSDORG00000008571 ortholog_one2one 4 retrogenes
Equus caballus ENSECAG00000010852 possible_ortholog 6 retrogenes
Felis catus ENSFCAG00000012041 ortholog_one2one 11 retrogenes
Homo sapiens ENSG00000129824 possible_ortholog 1 retrogene
Homo sapiens ENSG00000198034 ortholog_one2one 19 retrogenes
Meleagris gallopavo ENSMGAG00000009671 ortholog_one2many 1 retrogene
Microcebus murinus ENSMICG00000016606 ortholog_one2one 58 retrogenes
Myotis lucifugus ENSMLUG00000011685 ortholog_one2one 5 retrogenes
Macaca mulatta ENSMMUG00000003295 ortholog_one2one 7 retrogenes
Monodelphis domestica ENSMODG00000011070 possible_ortholog 1 retrogene
Mustela putorius furo ENSMPUG00000005294 possible_ortholog 11 retrogenes
Mus musculus ENSMUSG00000031320 ortholog_one2one 13 retrogenes
Nomascus leucogenys ENSNLEG00000018121 ortholog_one2one 25 retrogenes
Otolemur garnettii ENSOGAG00000011808 possible_ortholog 2 retrogenes
Pongo abelii ENSPPYG00000020462 ortholog_one2one 24 retrogenes
Pan troglodytes ENSPTRG00000022025 ortholog_one2one 9 retrogenes
Pan troglodytes ENSPTRG00000022470 possible_ortholog 1 retrogene
Rattus norvegicus ENSRNOG00000003201 possible_ortholog 1 retrogene
Sus scrofa ENSSSCG00000012405 ortholog_one2one 5 retrogenes
Tupaia belangeri ENSTBEG00000002918 ortholog_one2one 20 retrogenes
Tarsius syrichta ENSTSYG00000003137 ortholog_one2one 16 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_vpac_244 67.52 59.53
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2. retro_vpac_460 100.00 66.93
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3. retro_vpac_604 85.55 67.32
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4. retro_vpac_653 91.28 66.93
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Download FASTA sequences of all ENSVPAG00000010952 retrocopies