RetrogeneDB ID: | retro_tsyr_1645 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_528658:575..995(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000008159 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 63.45 % |
Parental protein coverage: | 80. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 5 |
Parental | EEAEPEEFVVEKVLDRRVVNGKVEYFLKWKG-FTDADNTWEPEENL-DCPELIEAFLNS-QKAGKEKDGT |
...EPE.F.VE..LD..V...KV.YFLK.K..F.DADNT.EP.....D.PELIEAFLNS..K..K.K... | |
Retrocopy | KQTEPEKFLVEQELD*HVLKWKVNYFLKRKY<FADADNTCEPXXXX>DSPELIEAFLNS>KKSVKKKV-V |
Parental | KRKSLSDSESDDSKSKKKRDAAD-KPRGFARGLDPERIIGATDSSGELMFLMK-WKDSDEADLVLAKEAN |
....L...ES.DSKSKKKRDAA..KP..FARGLD.E.IIGATDSSGELMFL.K..KDSDEADLV..KEAN | |
Retrocopy | QNGQLYLTESNDSKSKKKRDAAN>KPGDFARGLDSEGIIGATDSSGELMFLLK>EKDSDEADLVMVKEAN |
Parental | MKCPQ |
.K.PQ | |
Retrocopy | KKYPQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002897 | 11 retrocopies | |
Callithrix jacchus | ENSCJAG00000007952 | 8 retrocopies | |
Equus caballus | ENSECAG00000012780 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006907 | 3 retrocopies | |
Mus musculus | ENSMUSG00000029836 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016583 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011713 | 9 retrocopies | |
Procavia capensis | ENSPCAG00000004904 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011814 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017913 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016711 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000004769 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000008159 | 6 retrocopies |
retro_tsyr_1459, retro_tsyr_1545, retro_tsyr_1552, retro_tsyr_1645 , retro_tsyr_203, retro_tsyr_583,
|
Tursiops truncatus | ENSTTRG00000000711 | 7 retrocopies |