RetrogeneDB ID: | retro_ecab_784 | ||
Retrocopylocation | Organism: | Horse (Equus caballus) | |
Coordinates: | 4:36656546..36657083(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSECAG00000016592 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX3 | ||
Ensembl ID: | ENSECAG00000012780 | ||
Aliases: | None | ||
Description: | chromobox homolog 3 [Source:HGNC Symbol;Acc:1553] |
Percent Identity: | 60.75 % |
Parental protein coverage: | 99.45 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | MASNKTTLQKMGKKQNGKSKKVEEAEPEEFVVEKVLDRRVVNGKVEYFLKWK-GFTDADNT-WEPEENLD |
MA.NKT.L..............EEAEPEEFV.EK..DR.VV.GK.E.FLKWK.G.TD.DN..WEPEE... | |
Retrocopy | MAFNKTMLXXXXXXXXXXXXXXEEAEPEEFVLEKAQDRYVVDGKAECFLKWK<GNTDSDNI<WEPEESVN |
Parental | CPELIEAFLNSQKAGKEKDGT-KRKSLSDSESDDSKSKKKRDTADKPRGFARGLDPE-RIIGATDSSGEL |
CPELIE.F.NSQ..GKEK.GT.K..S.S.S....SK....RD.ADK.R.FAR..DPE.RI..A..SSG.L | |
Retrocopy | CPELIEIFINSQRTGKEKGGT>KSLSDSESYDSKSKT---RDVADKSRSFARDRDPE>RIMSASQSSGGL |
Parental | MFLMKWKDSDEADLVLAKEANMKCPQIVIAFYEERLTWHSCPEDEA |
MFL.K.KD.DE..LVLAKEANM.C..IV..FYEER.TWHSC.E.EA | |
Retrocopy | MFLRKRKDADEVGLVLAKEANMWCSHIVTPFYEERRTWHSCLENEA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP021940_articular_cartilage | 0 .00 RPM | 16 .29 RPM |
SRP021940_cerebellum | 0 .00 RPM | 12 .41 RPM |
SRP021940_embryo | 0 .00 RPM | 28 .13 RPM |
SRP021940_placental_villous | 0 .00 RPM | 12 .89 RPM |
SRP021940_synovial_membrane | 0 .00 RPM | 10 .60 RPM |
SRP021940_testis | 0 .00 RPM | 10 .93 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002897 | 11 retrocopies | |
Callithrix jacchus | ENSCJAG00000007952 | 8 retrocopies | |
Equus caballus | ENSECAG00000012780 | 1 retrocopy |
retro_ecab_784 ,
|
Loxodonta africana | ENSLAFG00000006907 | 3 retrocopies | |
Mus musculus | ENSMUSG00000029836 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016583 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011713 | 9 retrocopies | |
Procavia capensis | ENSPCAG00000004904 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011814 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017913 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016711 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000008159 | 6 retrocopies | |
Tursiops truncatus | ENSTTRG00000000711 | 7 retrocopies |