RetrogeneDB ID: | retro_ttru_1247 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_108655:54680..55189(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX3 | ||
Ensembl ID: | ENSTTRG00000000711 | ||
Aliases: | None | ||
Description: | chromobox homolog 3 [Source:HGNC Symbol;Acc:1553] |
Percent Identity: | 59.06 % |
Parental protein coverage: | 90.16 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | GKSKK-VEEAEPEEFVVEKVLDRRVVNGKVEYFLKWKGFTDADNTWEPEENLDCPELIEAFLNSQKAGKE |
GK.K..VEE...EE.VVEKVLD..V..GKVEY.LKW.GF.D.D.TWEPEENLDCP.LI...L.S...... | |
Retrocopy | GKTKQEVEEVLEEEYVVEKVLDCWVEKGKVEYLLKWTGFSDEDDTWEPEENLDCPDLIAELLQSENNTRD |
Parental | KDGTKR-KSLSDSESDDSKSKKK----RDAADKPRGFARGLDPERIIGATDSSGELMFLMKWKDSDEADL |
.......K...D....D.....K.........KP.GFA.GL.PE.IIGATDSSGEL.FLMKWK.SDEADL | |
Retrocopy | INQREA<KRKADPDLEDKGEESKPKKKKEKSEKPLGFAQGLEPEGIIGATDSSGELVFLMKWKNSDEADL |
Parental | VLAKEANMRCPQIVIAFYEERLTWHSCPEDE |
V.AKEAN..CPQ.VI.FYEERLTWHS.P... | |
Retrocopy | VPAKEANVKCPQVVITFYEERLTWHSYPSED |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000002897 | 11 retrocopies | |
Callithrix jacchus | ENSCJAG00000007952 | 8 retrocopies | |
Equus caballus | ENSECAG00000012780 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000006907 | 3 retrocopies | |
Mus musculus | ENSMUSG00000029836 | 1 retrocopy | |
Otolemur garnettii | ENSOGAG00000016583 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000011713 | 9 retrocopies | |
Procavia capensis | ENSPCAG00000004904 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000011814 | 2 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017913 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000016711 | 4 retrocopies | |
Tarsius syrichta | ENSTSYG00000008159 | 6 retrocopies | |
Tursiops truncatus | ENSTTRG00000000711 | 7 retrocopies |
retro_ttru_1238, retro_ttru_1247 , retro_ttru_1851, retro_ttru_294, retro_ttru_52, retro_ttru_591, retro_ttru_644,
|
Tursiops truncatus | ENSTTRG00000004524 | 1 retrocopy |