RetrogeneDB ID:

retro_tsyr_1759

Retrocopy
location
Organism:Tarsier (Tarsius syrichta)
Coordinates:scaffold_57221:1457..1814(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:CDV3
Ensembl ID:ENSTSYG00000011401
Aliases:None
Description:CDV3 homolog (mouse) [Source:HGNC Symbol;Acc:26928]


Retrocopy-Parental alignment summary:






>retro_tsyr_1759
CAGCAAAGATAGGTGGATTACAGCGGCCTCAGAGATCAGGCAATGCAAATCAGTGAAAGGGAAGATGATCATGAGAAGAG
AGAAGATCCAGGCGATAACTGGGAAGAAGGTGGAGGAGGTGCTGGTGGTGTAGAAAAGTCTTCAGGTCCCTGGAATAAAA
CAGCTCCGGCCCAAACACCTCCTGCTCCTGTAATTGTTACAGAAACTCCAGAACCGGCAATGACTAGTGGTGTGTATAGG
CCTCCTGGGGCCAGATTAACCACAACGAGAAAAACACCACAAGGACCACCAGAAATATACAGCGACACACAGTTCCCATC
CCTGCAGTCAACTGCCAAGCACCTAGAAAGTCGGAAG

ORF - retro_tsyr_1759 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 89.26 %
Parental protein coverage: 67.98 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalEQKEVDYSGLRVQAMQISSEKEEDDNEKREDPGDNWEEGGGGGGGVEKSSGPWNKAAPAQAPPAPVIVTE
.Q..VDYSGLR.QAMQIS....EDD.EKREDPGDNWEEGGGG.GGVEKSSGPWNK.APAQ.PPAPVIVTE
RetrocopyQQR*VDYSGLRDQAMQIS--EREDDHEKREDPGDNWEEGGGGAGGVEKSSGPWNKTAPAQTPPAPVIVTE
ParentalTPEPGMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHLESRK
TPEP.MTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHLESRK
RetrocopyTPEPAMTSGVYRPPGARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHLESRK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tarsius syrichta was not studied using RNA-Seq expression data.
Tarsius syrichta was not studied using ChIP-Seq data.
Tarsius syrichta was not studied using EST data.
Tarsius syrichta was not studied using FANTOM5 data.
retro_tsyr_1759 was not experimentally validated.

Retrocopy orthology:
Tarsius syrichta does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 6 parental genes, and 19 retrocopies.

Species Parental gene accession Retrocopies number
Bos taurus ENSBTAG000000355561 retrocopy
Choloepus hoffmanni ENSCHOG000000089635 retrocopies
Dasypus novemcinctus ENSDNOG000000102085 retrocopies
Sus scrofa ENSSSCG000000116371 retrocopy
Tupaia belangeri ENSTBEG000000149105 retrocopies
Tarsius syrichta ENSTSYG00000011401 2 retrocopies
retro_tsyr_1381, retro_tsyr_1759 ,



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