RetrogeneDB ID: | retro_chof_1763 | ||
Retrocopylocation | Organism: | Sloth (Choloepus hoffmanni) | |
Coordinates: | scaffold_379086:1..493(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSCHOG00000000171 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CDV3 | ||
Ensembl ID: | ENSCHOG00000008963 | ||
Aliases: | None | ||
Description: | CDV3 homolog (mouse) [Source:HGNC Symbol;Acc:26928] |
Percent Identity: | 65.9 % |
Parental protein coverage: | 95.51 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 3 |
Parental | EFEQKEVDYSGLRVQAMQISSEKEE-DDNEKREDPGDNWEEGGGGGGGVEKSSGPWNKTALVQAPPAPVI |
EFEQKE...SGLRV.A..I.....E.DD...REDPGD.WEEGGG.GG....SSGPWNKTALVQAPPAP.I | |
Retrocopy | EFEQKEGEHSGLRVRAAVIKCYRKE<DDDGRREDPGDSWEEGGGAGG--VESSGPWNKTALVQAPPAPGI |
Parental | VTETPEPVMTSGVYRPPG-ARLTTTRKTPQGPPEIYSDTQFPSLQSTAKHVESRKDKEMEKSFEVVRHKN |
VTETPEP.MT.GV.RPPG.A.LT.T.KT...P....S..Q.P........VESR.DKE..KSFEVV.HK. | |
Retrocopy | VTETPEPLMTRGVCRPPG<AGLTSTGKTRE-PAGTDSGPQSPPC-CPCQPVESRRDKEV-KSFEVVSHKH |
Parental | RGRDEVSKN-QALKLQLDNQYAVLENQKSSLTQ |
RG..EVSK..QALKLQLDN.YA.LENQKSS.TQ | |
Retrocopy | RGMEEVSKS<QALKLQLDNAYAGLENQKSSHTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Bos taurus | ENSBTAG00000035556 | 1 retrocopy | |
Choloepus hoffmanni | ENSCHOG00000008963 | 5 retrocopies | |
Callithrix jacchus | ENSCJAG00000002998 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000010208 | 5 retrocopies | |
Equus caballus | ENSECAG00000015689 | 2 retrocopies | |
Homo sapiens | ENSG00000091527 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000027821 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000009864 | 1 retrocopy | |
Mus musculus | ENSMUSG00000032803 | 10 retrocopies | |
Nomascus leucogenys | ENSNLEG00000003470 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000012748 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000003600 | 3 retrocopies | |
Pongo abelii | ENSPPYG00000025898 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000015409 | 1 retrocopy | |
Sus scrofa | ENSSSCG00000011637 | 1 retrocopy | |
Tupaia belangeri | ENSTBEG00000014910 | 5 retrocopies | |
Tarsius syrichta | ENSTSYG00000011401 | 2 retrocopies |