RetrogeneDB ID: | retro_tsyr_2006 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_7836:294..777(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSTSYG00000000497 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RRP15 | ||
Ensembl ID: | ENSTSYG00000012715 | ||
Aliases: | None | ||
Description: | ribosomal RNA processing 15 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:24255] |
Percent Identity: | 81.37 % |
Parental protein coverage: | 56.43 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | AVQDSRVSAGKKLKKPPKKKMKMVAGAVSSELEDEAKDASDGE---GSCGLEKDYFSSDDEAIEADNEDD |
AVQDS.VS.GKKLKKPPKKKMKMVA..VSSELEDEAKDASDGE...GSCGLEKDYFSSDDEAIE.DNEDD | |
Retrocopy | AVQDSHVSVGKKLKKPPKKKMKMVARTVSSELEDEAKDASDGEGSIGSCGLEKDYFSSDDEAIEVDNEDD |
Parental | AEPYDIENKNAAESSVGTNTGWADAMAKILNKKTPESKSTILVKNKELEKEKEKLKQERIEKRKQRDKRL |
..P.D.ENKNA.ESSVGTNTGWADAMAKILNKKTPESKSTILVKNKE.................QRDKRL | |
Retrocopy | VQPCDKENKNAVESSVGTNTGWADAMAKILNKKTPESKSTILVKNKEXXXXXXXXXXXXXXXXXQRDKRL |
Parental | EWEMMHRVKPDVVQDKETERN |
EWEMMHRVKPDVVQDKETERN | |
Retrocopy | EWEMMHRVKPDVVQDKETERN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000000174 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000012916 | 2 retrocopies | |
Mus musculus | ENSMUSG00000001305 | 1 retrocopy | |
Oryctolagus cuniculus | ENSOCUG00000017863 | 4 retrocopies | |
Ictidomys tridecemlineatus | ENSSTOG00000001244 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000012715 | 1 retrocopy |
retro_tsyr_2006 ,
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