RetrogeneDB ID: | retro_tsyr_2070 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_8639:35495..36308(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPD | ||
Ensembl ID: | ENSTSYG00000010395 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) [Source:HGNC Symbol;Acc:5036] |
Percent Identity: | 57.04 % |
Parental protein coverage: | 94.95 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | QREEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKL |
Q....KM.I....WDT.KKDL..Y.S.FGEVVDCT.K.DP.TG.SRGFGFVLFK...SVDKV...KEHKL | |
Retrocopy | QQDDGKMLIRDFNWDTSKKDLTEYLS*FGEVVDCTIKTDPVTGPSRGFGFVLFKDASSVDKVLELKEHKL |
Parental | NGKVID-PKRAKAMKTKEPVKKIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTN-KRRGF-CFIT |
.GK.ID.P.RAKA..T.......FV...SPDT.E..I.EYFG.FGE.E.IEL.MD.KTN.K...F.CFIT | |
Retrocopy | DGKLID>PQRAKALRTHQ----VFVSRFSPDTSEDQIKEYFGAFGEIENIELLMDIKTNFKKENF<CFIT |
Parental | FKEEEPVKKIMEKKYHNVGLSKCEIKVAMSKEQYQQQQQWGSRGGFAG---RARGRGGGPSQNWNQGYSN |
...E.PV.K..E..YH..G..K..IKVA.SKE.Y.QQQQ.G.RG..AG...RARGRG.G..QNWNQG..N | |
Retrocopy | YTDEQPVNKLLESRYHQIGSRKYDIKVAQSKEVYRQQQQKGGRGAAAGGPGRARGRGLGQGQNWNQGFNN |
Parental | YWNQGYGNYGY---NSQGYGGYGGYDYTGYN--NY---YGYGDYSNQQSGYGKVSRRGGHQNSYKPY |
Y..QGY.NY.......Q.Y.GYG.YDYTGYN..NY....G..D.S.Q.S....V.R.G..QN...PY | |
Retrocopy | YSDQGYRNYNSAYGGDQNYSGYGVYDYTGYNYGNYGCGQGHADCSGQPSTWHYVLRDGNQQNYHQPY |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015165 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000012507 | 1 retrocopy | |
Homo sapiens | ENSG00000138668 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026760 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016483 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016215 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013312 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010395 | 3 retrocopies |
retro_tsyr_1092, retro_tsyr_2070 , retro_tsyr_269,
|
Tarsius syrichta | ENSTSYG00000012949 | 2 retrocopies | |
Tursiops truncatus | ENSTTRG00000007592 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004374 | 2 retrocopies |