RetrogeneDB ID: | retro_vpac_97 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1792:52838..53306(-) | ||
Located in intron of: | ENSVPAG00000002905 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HNRNPD | ||
Ensembl ID: | ENSVPAG00000004374 | ||
Aliases: | None | ||
Description: | heterogeneous nuclear ribonucleoprotein D (AU-rich element RNA binding protein 1, 37kDa) [Source:HGNC Symbol;Acc:5036] |
Percent Identity: | 63.12 % |
Parental protein coverage: | 61.24 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | YFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHKLNGKVIDPKRAKAMKTKEPVKKIF |
Y.S.FGEVVDCT.K.D..TGRSRGFGFVLFK...SV.KV...KEHKL..K..DP.RAKA.K.KEP..KIF | |
Retrocopy | YLS*FGEVVDCTVKTDLVTGRSRGFGFVLFKDAASVNKVLELKEHKLDSKLTDPERAKALKGKEP-PKIF |
Parental | -VGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFC-FITFKEEEPVKKIMEKKYHNVGLSKCE |
..G.LSPDT.EE.I.E.FG.FGE.E.IELPMD.KTN.RRGFC.F....EE.PVKK..E...H..G..KCE | |
Retrocopy | >LGELSPDTSEEQIKECFGAFGEIENIELPMDTKTNERRGFC<FTYTDEE-PVKKLLESRFHQIGSGKCE |
Parental | IKVAMSKEQYQQQQQWGSRG |
.K.A..KE.Y.QQQQ....G | |
Retrocopy | VKLAQPKEVYRQQQQQKKEG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Callithrix jacchus | ENSCJAG00000015165 | 1 retrocopy | |
Dipodomys ordii | ENSDORG00000012507 | 1 retrocopy | |
Homo sapiens | ENSG00000138668 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000026760 | 1 retrocopy | |
Loxodonta africana | ENSLAFG00000016483 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000016215 | 1 retrocopy | |
Sarcophilus harrisii | ENSSHAG00000013312 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000010395 | 3 retrocopies | |
Tursiops truncatus | ENSTTRG00000007592 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000004374 | 2 retrocopies |
retro_vpac_484, retro_vpac_97 ,
|
Vicugna pacos | ENSVPAG00000010417 | 1 retrocopy |