Parental gene:

ENSCJAG00000015165

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:3:111883574..111904535(+)


>ENSCJAG00000015165
NTGGTGGCGCCGGCACAGGGGGCAGCGGCGGCGGCGGGAAGCGGAGCCGGGACCGGAGGCGGAACCGCGTCTGGGGGCAC
CGAAGGGGGCAGCGCTGAGTCGGAGGGGGCGAAGATCGACGCCAGTAAGAACGAGGAAGATGAAGGCCATTCAAACTCCT
CCCCACGACACACTGAAGCAGCGACGGCACAGCGGGAAGAATGGAAAATGTTTATAGGAGGCCTTAGCTGGGACACTACA
AAGAAAGATCTGAAGGACTACTTTTCCAAATTTGGTGAAGTTGTAGACTGCACTCTGAAGTTAGATCCTATCACAGGGCG
ATCAAGGGGTTTTGGCTTTGTGCTATTTAAAGAATCGGAGAGTGTAGATAAGGTTATGGATCAGAAAGAACATAAATTGA
ATGGGAAGGTGATTGATCCTAAAAGGGCCAAAGCCATGAAAACAAAAGAGCCGGTTAAAAAAATTTTTGTTGGTGGCCTT
TCTCCAGATACACCTGAAGAGAAAATAAGGGAGTACTTTGGTGGTTTTGGTGAGGTGGAATCCATAGAGCTCCCCATGGA
CAACAAGACCAATAAGAGGCGTGGCTTCTGCTTTATTACCTTTAAGGAAGAAGAACCAGTGAAGAAGATAATGGAAAAGA
AATACCACAATGTTGGTCTTAGTAAATGTGAAATAAAAGTAGCCATGTCGAAGGAACAGTATCAGCAACAGCAACAGTGG
GGATCTAGAGGAGGATTTGCAGGAAGAGCTCGTGGAAGAGGTGGTGGCCCCAGTCAAAACTGGAACCAGGGATATAGTAA
CTATTGGAATCAAGGCTATGGCAACTATGGATATAACAGCCAAGGTTACGGTGGTTATGGAGGATATGACTACACTGGTT
ACAACAACTACTATGGATATGGTGATTATAGCAACCAGCAGAGTGGTTATGGGAAGGTATCCAGGCGAGGTGGTCATCAA
AATAGCTACAAACCATACTAA

Library Parental gene expression (RPM)
SRP051959_spleen 31 .97 RPM
SRP051959_skeletal_muscle 13 .17 RPM
SRP051959_lymph_node 34 .18 RPM
SRP051959_lung 30 .18 RPM
SRP051959_liver 12 .76 RPM
SRP051959_kidney 23 .10 RPM
SRP051959_heart 19 .68 RPM
SRP051959_colon 19 .59 RPM



Species Parental gene accession Homology type Retrogenes number
Callithrix jacchus ENSCJAG00000007908 within_species_paralog 2 retrogenes
retro_cjac_2285, retro_cjac_3041,
Callithrix jacchus ENSCJAG00000015197 within_species_paralog 1 retrogene
retro_cjac_2589,
Dipodomys ordii ENSDORG00000012507 ortholog_one2many 1 retrogene
retro_dord_649,
Homo sapiens ENSG00000138668 ortholog_one2many 1 retrogene
retro_hsap_4689,
Gorilla gorilla ENSGGOG00000026760 ortholog_one2many 1 retrogene
retro_ggor_2916,
Loxodonta africana ENSLAFG00000016483 ortholog_one2many 1 retrogene
retro_lafr_686,
Pan troglodytes ENSPTRG00000016215 ortholog_one2many 1 retrogene
retro_ptro_3116,
Sarcophilus harrisii ENSSHAG00000013312 ortholog_one2many 1 retrogene
retro_shar_752,
Tupaia belangeri ENSTBEG00000002327 possible_ortholog 1 retrogene
retro_tbel_2698,
Tarsius syrichta ENSTSYG00000010395 ortholog_one2many 3 retrogenes
retro_tsyr_1092, retro_tsyr_2070, retro_tsyr_269,
Tursiops truncatus ENSTTRG00000007592 ortholog_one2many 1 retrogene
retro_ttru_1913,
Vicugna pacos ENSVPAG00000004374 ortholog_one2many 2 retrogenes
retro_vpac_484, retro_vpac_97,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_2796 85.78 78.89
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Download FASTA sequences of all ENSCJAG00000015165 retrocopies