RetrogeneDB ID: | retro_tsyr_2108 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_91786:6384..7206(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | KCTD20 | ||
Ensembl ID: | ENSTSYG00000012406 | ||
Aliases: | None | ||
Description: | potassium channel tetramerization domain containing 20 [Source:HGNC Symbol;Acc:21052] |
Percent Identity: | 72.26 % |
Parental protein coverage: | 64.89 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | PQIFTAHPDTMLGRMFGPGREYNFTRPNEKGEYEIAEGISATVFRSVLDYYKTGIINCPDGISIPDLRDT |
P.IFTA.P.TMLGRMFG.GRE.NFTRPNEKGE.E.AEGI..TVFR..LDYYKTGII.CPDG.SIP.LR.. | |
Retrocopy | PSIFTAQPNTMLGRMFGSGREHNFTRPNEKGE*EVAEGIGSTVFRATLDYYKTGIIRCPDGTSIPELREA |
Parental | CDYLCINFDFNTIRC----ALLHELSNDGAHKQFDHYLEELILPIMVGCAKKGERECHIVVLTDEAPMWW |
CDYLCI.F...TI.C....AL.HELSNDGA..QF..YLEE.ILP.MV..A..GERECHIVVLTD.....W | |
Retrocopy | CDYLCIFFEYSTIKCRDLSALMHELSNDGARRQFEFYLEEMILPLMVASAQSGERECHIVVLTDDDVVDW |
Parental | NS--PPPMGEEYSQILYSSKLYRFFKYIENRDVAKTVLKERGLKNIRIGIEGYPTCKEKIKRRPGGRSEV |
....P..MGEEYSQI.YS.K.YRFFKYIENRDV.K.VLKERG.K.IR.GIEGYPT.KEK.K.RPGG..EV | |
Retrocopy | DEEYPSQMGEEYSQIIYSTKSYRFFKYIENRDVVKSVLKERGRKKIRLGIEGYPTDKEKVKKRPGGHPEV |
Parental | IYNYVQRPFIQMSWEKEEGKSRHVDFQCVRSKSLTNLVAAGEDVLEDQEILMHHPPQVDELDRL |
IYNYVQRPFI.MSWEKEEGKSRHVDFQCV.SKS.TNL.AA..D...DQ...MH..PQVDE.D.L | |
Retrocopy | IYNYVQRPFIRMSWEKEEGKSRHVDFQCVKSKSITNLAAAVADIPQDQLVVMHPTPQVDEVDIL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Equus caballus | ENSECAG00000017166 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000007139 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000000445 | 2 retrocopies | |
Tarsius syrichta | ENSTSYG00000012406 | 1 retrocopy |
retro_tsyr_2108 ,
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