RetrogeneDB ID: | retro_tsyr_559 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_139810:7600..8190(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000004067 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.85 % |
Parental protein coverage: | 86.03 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | YRYCKNKPYPKSRFCRGVPDAKIRIFDLGRKKAKVDEFPLCGHMVSDEYEQLSSEALEAARICANKYMVK |
Y.YCKNKP.PKSRFCRG.PDAKIRIFDLG.KKAKVDEFPLCGH..SDEYEQLSSE.LEAA.I.ANKYMVK | |
Retrocopy | YWYCKNKPHPKSRFCRGIPDAKIRIFDLGQKKAKVDEFPLCGHVMSDEYEQLSSEDLEAACIWANKYMVK |
Parental | SCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNKEHV |
SCGKDGFH.RVRLH.FH.IRINKMLSCAGAD.LQTGMRG.FGKPQGTVARVHIGQV.MSI.TKL.NKEHV | |
Retrocopy | SCGKDGFHTRVRLHHFHIIRINKMLSCAGADMLQTGMRGSFGKPQGTVARVHIGQVTMSICTKLKNKEHV |
Parental | IEALR-RAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGP |
IE.L..RAKFKFPG.Q..HISKK.G.TKFNADEFED.V.EKRLIPD.CGVKYI..RGP | |
Retrocopy | IEVLH<RAKFKFPGHQIYHISKKRGITKFNADEFEDTVTEKRLIPDDCGVKYISSRGP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000004369 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000001712 | 10 retrocopies | |
Gorilla gorilla | ENSGGOG00000000131 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000013163 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000005494 | 5 retrocopies | |
Monodelphis domestica | ENSMODG00000008731 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003734 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004067 | 7 retrocopies |
retro_tsyr_11, retro_tsyr_1644, retro_tsyr_1739, retro_tsyr_1986, retro_tsyr_559 , retro_tsyr_640, retro_tsyr_960,
|
Tursiops truncatus | ENSTTRG00000011407 | 7 retrocopies |