RetrogeneDB ID: | retro_tsyr_640 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_158407:1705..2125(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSTSYG00000004067 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 73.24 % |
Parental protein coverage: | 61.14 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 2 |
Parental | LEAARICANKYMVKSCGKDGFHIRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQV |
L......ANK.MVKSCGKDG..I.VRLH.FH.I.IN.MLSCAG.DRLQTG.R..FGKPQGT...VH.G.V | |
Retrocopy | LDTSYFSANKCMVKSCGKDGLQIQVRLHSFHIICINQMLSCAGVDRLQTGIRSTFGKPQGTMNWVHVG*V |
Parental | IMSIRT-KLQNKEHVIEALRRAKFKFPGR-QKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPN |
I.SI.T.KLQNKEHVIEAL.RAKFKFP...QKI.I.KK.GFTKF.ADEFEDM.AEK.LIPD.CGVKYIPN | |
Retrocopy | IISI*T<KLQNKEHVIEALCRAKFKFPDH>QKICI*KK*GFTKFKADEFEDMMAEKWLIPDDCGVKYIPN |
Parental | RG |
.G | |
Retrocopy | HG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Dipodomys ordii | ENSDORG00000004369 | 2 retrocopies | |
Echinops telfairi | ENSETEG00000001712 | 10 retrocopies | |
Gorilla gorilla | ENSGGOG00000000131 | 4 retrocopies | |
Macropus eugenii | ENSMEUG00000013163 | 3 retrocopies | |
Macaca mulatta | ENSMMUG00000005494 | 5 retrocopies | |
Monodelphis domestica | ENSMODG00000008731 | 2 retrocopies | |
Tupaia belangeri | ENSTBEG00000003734 | 1 retrocopy | |
Tarsius syrichta | ENSTSYG00000004067 | 7 retrocopies |
retro_tsyr_11, retro_tsyr_1644, retro_tsyr_1739, retro_tsyr_1986, retro_tsyr_559, retro_tsyr_640 , retro_tsyr_960,
|
Tursiops truncatus | ENSTTRG00000011407 | 7 retrocopies |