RetrogeneDB ID:

retro_ttru_1428

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_113032:144716..145349(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:RPL6
Ensembl ID:ENSTTRG00000009268
Aliases:None
Description:ribosomal protein L6 [Source:HGNC Symbol;Acc:10362]


Retrocopy-Parental alignment summary:






>retro_ttru_1428
ATGGCGGGTGAAAATGCTGAGAAGCCAGATACTAAGGAGAAAAAACCTGAAGCCAAGAAGGCTGATGGTGGTGGCAAGGT
TAACAAGGTGAAGCAGGGGAAGCCCCGCTGCTGCCAAAACCCTGTCCTGGTCAGAGGAATTGGCAGATATTCCCTATCGG
TTATGTATTCCGGAACGGCCTTGTACAAGAGGAGGTATTCAGCAGCTAAATCCAAGGTGGAAAAGAAGAAAAAAGTGAAG
GTTCTTGCTACTGTCACAAAACCAGTTGGTGGTGACAAGAATGGTGGTACCCGGGTGGTTAAACTTCGCAAAATGCCTAG
ATATTATCCTACTGAAGACGTGCCTCGAAAGCTGTTGAGTCACAGCAAAAAACCCTTCAGTAAGCACGTGAGAAAACTGC
GCGCTCGCATCACTCCTGGGACTATTCTGATCTGCCTCTCTGAGCGCCACAGAGGCAAGAGGGTCATTTTCCTGAAGCAG
CTGAGCAGTGGTTTGCTACTTATGACTGGGCCTCTGTCCCTCAGTCGAGTTCCTCTGCGGAGAACACACTAGAAATTTGT
CCTTGCCACTTCCACCAAAATTGATATCAGTGGTGTGAAAATCCCAGAACAGCTCACTGACGCTTACTTCAAA

ORF - retro_ttru_1428 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 87.85 %
Parental protein coverage: 75.35 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMAGEKPEKPDTKEKKPEAKKTDAGGKVKKVKQVKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYS
MAGE..EKPDTKEKKPEAKK.D.GGKV.KVKQ...GKP.C..NPVLVRGIGRYS.S.MYS..ALYKR.YS
RetrocopyMAGENAEKPDTKEKKPEAKKADGGGKVNKVKQ---GKPRCCQNPVLVRGIGRYSLSVMYSGTALYKRRYS
ParentalAAKSKVEKKKKVKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASI
AAKSKVEKKKKVKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSH.KKPFSKHVRKLRA.I
RetrocopyAAKSKVEKKKKVKVLATVTKPVGGDKNGGTRVVKLRKMPRYYPTEDVPRKLLSHSKKPFSKHVRKLRARI
ParentalTPGTILIILTGRHRGKRVIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTD
TPGTILI.L..RHRGKRVIFLKQLSSGLLL.TGPLSL.RVPLRRTH.KFV.ATSTKIDISGVKIPE.LTD
RetrocopyTPGTILICLSERHRGKRVIFLKQLSSGLLLMTGPLSLSRVPLRRTH*KFVLATSTKIDISGVKIPEQLTD
ParentalAYFK
AYFK
RetrocopyAYFK

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1428 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1428 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 21 parental genes, and 121 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000030601 retrocopy
Bos taurus ENSBTAG000000317236 retrocopies
Canis familiaris ENSCAFG000000088731 retrocopy
Callithrix jacchus ENSCJAG000000124507 retrocopies
Cavia porcellus ENSCPOG000000135268 retrocopies
Equus caballus ENSECAG000000175141 retrocopy
Felis catus ENSFCAG0000000685812 retrocopies
Gorilla gorilla ENSGGOG0000000337216 retrocopies
Macaca mulatta ENSMMUG000000074331 retrocopy
Monodelphis domestica ENSMODG000000030964 retrocopies
Mustela putorius furoENSMPUG000000025269 retrocopies
Mus musculus ENSMUSG0000002961413 retrocopies
Nomascus leucogenys ENSNLEG000000270932 retrocopies
Oryctolagus cuniculus ENSOCUG000000038025 retrocopies
Pongo abelii ENSPPYG0000002585513 retrocopies
Rattus norvegicus ENSRNOG000000259361 retrocopy
Sarcophilus harrisii ENSSHAG000000070962 retrocopies
Sus scrofa ENSSSCG000000248254 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000094093 retrocopies
Tursiops truncatus ENSTTRG00000009268 7 retrocopies
Vicugna pacos ENSVPAG000000070005 retrocopies



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