RetrogeneDB ID:

retro_nleu_43

Retrocopy
location
Organism:Gibbon (Nomascus leucogenys)
Coordinates:GL397292.1:5352245..5353112(-)
Located in intron of:ENSNLEG00000001896
Retrocopy
information
Ensembl ID:ENSNLEG00000018676
Aliases:None
Status:KNOWN_PROTEIN_CODING
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSNLEG00000027093
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_nleu_43
ATGGCGGGTGAAAAAGTTGAGAAGCCAGATACTAAAGAGAAGAAACCCGAAGCCAAGAAGGCTGATGCTGGTGGCAAGGT
GAAAAAGGGTAACCTCAAGGCTAAAAAGCCCAAGAAGGGGAAGCCCCATTGCAGCCGCAACCCTGTCCTTGTCAGAGGAA
TTGGCAGGTATTCCCGATCTGCCATGTATTCCAGAAAGGCCATGTACAAGAGGAAGTACTCAGCCACTAAATCCAAGGTT
GAAAAGAAAAAGAAGGAGAAGGTTCTTGCAACTGTTACAAAACCAGTTGGTGGTGACAAGAACGGTGGTACCCGGGTGGT
TAAACTTCGCAAAATGCCTAGATATTATCCTACTGAAGATGTGCCTCGAAAGCTGTTGAGCCACGGCAAAAAACCCTTCA
GTCAGCACGTGAGAAAACTGCGAGCCAGCATTACCCCTGGGACCATTCTGATCATCCTTACTGGACGCCACAGGGGCAAG
AGGGTGGTTTTCCTGAAGCAGCTGGCTAGTGGCTTGTTACTTGTAACTGGACCTCTGGTCCTCAATCGAGTTCCTCTACG
AAGAACACACCAGAAATTTGTCATTGCCACCTCAACCAAAATCGATATCAGCAATGTAAAAATCCCAAAACATCTTACTG
ATGCTTACTTCAAGAAGAAGAAGCTGCGGAAGCCCAGACACCAGGAAGGTGAGATCTTCGACACAGAAAAAGAGAAATAC
GAGATTACGGAGCAGCGCAAGATTGATCAGAAAGCTGTGGACTCACAAATTTTACCAAAAATCAAAGCTATTCCTCAGCT
CCAGGCCTACCTGCGATCTGTGTTTGCCCTGACAAATGGAATTTATCCTCACAAATTGGTGTTCTAA

ORF - retro_nleu_43 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 98.31 %
Parental protein coverage: 100.0 %
Number of stop codons detected: 0
Number of frameshifts detected: 0


Retrocopy - Parental Gene Alignment:

ParentalMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVL
MPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVL
RetrocopyMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLLLVTGPLVL
ParentalNRVPLRRTHQKFVIATSTKIDISSVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQK
NRVPLRRTHQKFVIATSTKIDIS.VKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQK
RetrocopyNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIFDTEKEKYEITEQRKIDQK
ParentalAVDSQILPKIKAVPQLQGYLRSVFALTNGIYPHKLVF
AVDSQILPKIKA.PQLQ.YLRSVFALTNGIYPHKLVF
RetrocopyAVDSQILPKIKAIPQLQAYLRSVFALTNGIYPHKLVF

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Nomascus leucogenys was not studied using RNA-Seq expression data.
Nomascus leucogenys was not studied using ChIP-Seq data.
Nomascus leucogenys was not studied using EST data.
Nomascus leucogenys was not studied using FANTOM5 data.
retro_nleu_43 was not experimentally validated.

Retrocopy orthology:
Nomascus leucogenys does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 33 parental genes, and 835 retrocopies.

Species Parental gene accession Retrocopies number
Anolis carolinensis ENSACAG000000030601 retrocopy
Ailuropoda melanoleuca ENSAMEG0000000851010 retrocopies
Bos taurus ENSBTAG000000317236 retrocopies
Canis familiaris ENSCAFG000000088731 retrocopy
Choloepus hoffmanni ENSCHOG0000000291713 retrocopies
Callithrix jacchus ENSCJAG000000124507 retrocopies
Cavia porcellus ENSCPOG000000135268 retrocopies
Dasypus novemcinctus ENSDNOG000000170323 retrocopies
Dipodomys ordii ENSDORG000000057931 retrocopy
Equus caballus ENSECAG000000175141 retrocopy
Erinaceus europaeus ENSEEUG000000002813 retrocopies
Felis catus ENSFCAG0000000685812 retrocopies
Homo sapiens ENSG0000008900926 retrocopies
Gorilla gorilla ENSGGOG0000000337216 retrocopies
Loxodonta africana ENSLAFG000000022012 retrocopies
Microcebus murinus ENSMICG0000000296125 retrocopies
Macaca mulatta ENSMMUG000000074331 retrocopy
Monodelphis domestica ENSMODG000000030964 retrocopies
Mustela putorius furoENSMPUG000000025269 retrocopies
Mus musculus ENSMUSG0000002961413 retrocopies
Nomascus leucogenys ENSNLEG00000027093 2 retrocopies
retro_nleu_1813, retro_nleu_43 ,
Oryctolagus cuniculus ENSOCUG000000038025 retrocopies
Ochotona princeps ENSOPRG000000118002 retrocopies
Pongo abelii ENSPPYG0000002585513 retrocopies
Pteropus vampyrus ENSPVAG000000124092 retrocopies
Rattus norvegicus ENSRNOG000000259361 retrocopy
Sarcophilus harrisii ENSSHAG000000070962 retrocopies
Sus scrofa ENSSSCG000000248254 retrocopies
Ictidomys tridecemlineatus ENSSTOG000000094093 retrocopies
Tupaia belangeri ENSTBEG00000008626605 retrocopies
retro_tbel_1003, retro_tbel_1011, retro_tbel_1018, retro_tbel_1025, retro_tbel_1035, retro_tbel_1039, retro_tbel_104, retro_tbel_1041, retro_tbel_1042, retro_tbel_105, retro_tbel_1064, retro_tbel_1074, retro_tbel_1077, retro_tbel_1080, retro_tbel_1085, retro_tbel_109, retro_tbel_1094, retro_tbel_1096, retro_tbel_1097, retro_tbel_111, retro_tbel_1110, retro_tbel_1116, retro_tbel_1124, retro_tbel_1131, retro_tbel_1142, retro_tbel_1145, retro_tbel_1157, retro_tbel_1159, retro_tbel_1163, retro_tbel_1172, retro_tbel_118, retro_tbel_1187, retro_tbel_1192, retro_tbel_1197, retro_tbel_120, retro_tbel_1211, retro_tbel_1212, retro_tbel_1214, retro_tbel_1221, retro_tbel_1234, retro_tbel_1236, retro_tbel_1238, retro_tbel_1240, retro_tbel_1242, retro_tbel_1252, retro_tbel_1253, retro_tbel_1256, retro_tbel_1276, retro_tbel_128, retro_tbel_1287, retro_tbel_1291, retro_tbel_1292, retro_tbel_1297, retro_tbel_1307, retro_tbel_1308, retro_tbel_1309, retro_tbel_1316, retro_tbel_132, retro_tbel_1321, retro_tbel_1325, retro_tbel_1326, retro_tbel_1339, retro_tbel_1341, retro_tbel_1342, retro_tbel_1353, retro_tbel_1376, retro_tbel_139, retro_tbel_1399, retro_tbel_1401, retro_tbel_1408, retro_tbel_1409, retro_tbel_1412, retro_tbel_1432, retro_tbel_1438, retro_tbel_144, retro_tbel_1440, retro_tbel_1441, retro_tbel_1445, retro_tbel_1447, retro_tbel_1453, retro_tbel_1455, retro_tbel_1458, retro_tbel_1464, retro_tbel_1495, retro_tbel_1496, retro_tbel_150, retro_tbel_1508, retro_tbel_1511, retro_tbel_1517, retro_tbel_1520, retro_tbel_1526, retro_tbel_1536, retro_tbel_1544, retro_tbel_1547, retro_tbel_1553, retro_tbel_1559, retro_tbel_1560, retro_tbel_1578, retro_tbel_158, retro_tbel_1581, retro_tbel_1582, retro_tbel_1585, retro_tbel_1598, retro_tbel_1628, retro_tbel_1631, retro_tbel_1640, retro_tbel_1648, retro_tbel_165, retro_tbel_1652, retro_tbel_1660, retro_tbel_1670, retro_tbel_1672, retro_tbel_1674, retro_tbel_1679, retro_tbel_1681, retro_tbel_1687, retro_tbel_1691, retro_tbel_1702, retro_tbel_1703, retro_tbel_1706, retro_tbel_1732, retro_tbel_1736, retro_tbel_1737, retro_tbel_1742, retro_tbel_1743, retro_tbel_1751, retro_tbel_1759, retro_tbel_1771, retro_tbel_1782, retro_tbel_1788, retro_tbel_1799, retro_tbel_1805, retro_tbel_181, retro_tbel_1816, retro_tbel_1828, retro_tbel_1834, retro_tbel_1843, retro_tbel_1850, retro_tbel_1854, retro_tbel_1859, retro_tbel_186, retro_tbel_1867, retro_tbel_187, retro_tbel_1884, retro_tbel_1898, retro_tbel_190, retro_tbel_1900, retro_tbel_1909, retro_tbel_191, retro_tbel_192, retro_tbel_1926, retro_tbel_1927, retro_tbel_1937, retro_tbel_1949, retro_tbel_1953, retro_tbel_1956, retro_tbel_1961, retro_tbel_1974, retro_tbel_1983, retro_tbel_1985, retro_tbel_1990, retro_tbel_2003, retro_tbel_2007, retro_tbel_2012, retro_tbel_2018, retro_tbel_2019, retro_tbel_2029, retro_tbel_203, retro_tbel_2038, retro_tbel_2041, retro_tbel_2052, retro_tbel_2056, retro_tbel_2064, retro_tbel_2066, retro_tbel_2070, retro_tbel_2082, retro_tbel_2092, retro_tbel_2096, retro_tbel_2097, retro_tbel_212, retro_tbel_214, retro_tbel_215, retro_tbel_2158, retro_tbel_218, retro_tbel_2181, retro_tbel_2184, retro_tbel_2185, retro_tbel_219, retro_tbel_2222, retro_tbel_2235, retro_tbel_2237, retro_tbel_2244, retro_tbel_225, retro_tbel_2250, retro_tbel_2256, retro_tbel_2269, retro_tbel_227, retro_tbel_2273, retro_tbel_2275, retro_tbel_2301, retro_tbel_2305, retro_tbel_231, retro_tbel_2321, retro_tbel_2323, retro_tbel_233, retro_tbel_2331, retro_tbel_2342, retro_tbel_2375, retro_tbel_2389, retro_tbel_2396, retro_tbel_2411, retro_tbel_242, retro_tbel_2421, retro_tbel_243, retro_tbel_2446, retro_tbel_2456, retro_tbel_2471, retro_tbel_2476, retro_tbel_2481, retro_tbel_2499, retro_tbel_2501, retro_tbel_2502, retro_tbel_2507, retro_tbel_2509, retro_tbel_2514, retro_tbel_252, retro_tbel_2523, retro_tbel_2527, retro_tbel_253, retro_tbel_2530, retro_tbel_2533, retro_tbel_2537, retro_tbel_2546, retro_tbel_255, retro_tbel_256, retro_tbel_2560, retro_tbel_2565, retro_tbel_2568, retro_tbel_2594, retro_tbel_2597, retro_tbel_260, retro_tbel_2632, retro_tbel_2633, retro_tbel_2639, retro_tbel_2642, retro_tbel_2643, retro_tbel_2645, retro_tbel_2648, retro_tbel_2650, retro_tbel_2676, retro_tbel_2678, retro_tbel_2679, retro_tbel_2684, retro_tbel_2695, retro_tbel_2708, retro_tbel_2717, retro_tbel_2724, retro_tbel_2740, retro_tbel_2742, retro_tbel_2750, retro_tbel_2754, retro_tbel_278, retro_tbel_2785, retro_tbel_2791, retro_tbel_2796, retro_tbel_2797, retro_tbel_2800, retro_tbel_2803, retro_tbel_2804, retro_tbel_2805, retro_tbel_2812, retro_tbel_2817, retro_tbel_284, retro_tbel_2842, retro_tbel_2843, retro_tbel_2845, retro_tbel_2858, retro_tbel_2861, retro_tbel_2866, retro_tbel_2867, retro_tbel_287, retro_tbel_2870, retro_tbel_2876, retro_tbel_288, retro_tbel_2887, retro_tbel_291, retro_tbel_2912, retro_tbel_2914, retro_tbel_2919, retro_tbel_2920, retro_tbel_2928, retro_tbel_2958, retro_tbel_2968, retro_tbel_297, retro_tbel_2987, retro_tbel_2997, retro_tbel_300, retro_tbel_3003, retro_tbel_3009, retro_tbel_3012, retro_tbel_3019, retro_tbel_3029, retro_tbel_3030, retro_tbel_3034, retro_tbel_3036, retro_tbel_3038, retro_tbel_3039, retro_tbel_3043, retro_tbel_3045, retro_tbel_3047, retro_tbel_3049, retro_tbel_3052, retro_tbel_3053, retro_tbel_3057, retro_tbel_3063, retro_tbel_3064, retro_tbel_3066, retro_tbel_3068, retro_tbel_3078, retro_tbel_308, retro_tbel_3083, retro_tbel_3086, retro_tbel_3113, retro_tbel_3124, retro_tbel_3128, retro_tbel_313, retro_tbel_3131, retro_tbel_3133, retro_tbel_3139, retro_tbel_3146, retro_tbel_3157, retro_tbel_3158, retro_tbel_3163, retro_tbel_3166, retro_tbel_3169, retro_tbel_3176, retro_tbel_3177, retro_tbel_3178, retro_tbel_318, retro_tbel_3185, retro_tbel_3199, retro_tbel_3206, retro_tbel_321, retro_tbel_3221, retro_tbel_3225, retro_tbel_3226, retro_tbel_3249, retro_tbel_3257, retro_tbel_3263, retro_tbel_327, retro_tbel_3275, retro_tbel_3278, retro_tbel_3279, retro_tbel_3289, retro_tbel_3296, retro_tbel_3308, retro_tbel_3312, retro_tbel_3319, retro_tbel_3322, retro_tbel_3326, retro_tbel_3328, retro_tbel_334, retro_tbel_3348, retro_tbel_3357, retro_tbel_3374, retro_tbel_3375, retro_tbel_3382, retro_tbel_3394, retro_tbel_3395, retro_tbel_3411, retro_tbel_3427, retro_tbel_3433, retro_tbel_3439, retro_tbel_3440, retro_tbel_3455, retro_tbel_3474, retro_tbel_351, retro_tbel_3511, retro_tbel_3518, retro_tbel_3521, retro_tbel_3532, retro_tbel_3533, retro_tbel_3551, retro_tbel_3553, retro_tbel_3563, retro_tbel_3569, retro_tbel_357, retro_tbel_3574, retro_tbel_3579, retro_tbel_3582, retro_tbel_3584, retro_tbel_3588, retro_tbel_3594, retro_tbel_3599, retro_tbel_3612, retro_tbel_3614, retro_tbel_3629, retro_tbel_3633, retro_tbel_3643, retro_tbel_3645, retro_tbel_3646, retro_tbel_365, retro_tbel_3668, retro_tbel_3672, retro_tbel_3673, retro_tbel_368, retro_tbel_369, retro_tbel_3706, retro_tbel_3714, retro_tbel_3740, retro_tbel_3746, retro_tbel_3753, retro_tbel_376, retro_tbel_3765, retro_tbel_3768, retro_tbel_3773, retro_tbel_3778, retro_tbel_3787, retro_tbel_380, retro_tbel_3804, retro_tbel_3811, retro_tbel_3817, retro_tbel_3819, retro_tbel_3825, retro_tbel_3842, retro_tbel_3845, retro_tbel_3857, retro_tbel_3902, retro_tbel_3904, retro_tbel_3906, retro_tbel_3908, retro_tbel_3909, retro_tbel_3942, retro_tbel_3943, retro_tbel_3952, retro_tbel_3953, retro_tbel_3965, retro_tbel_3978, retro_tbel_3985, retro_tbel_3990, retro_tbel_3991, retro_tbel_4000, retro_tbel_4001, retro_tbel_4009, retro_tbel_403, retro_tbel_4038, retro_tbel_4040, retro_tbel_4041, retro_tbel_4044, retro_tbel_4060, retro_tbel_409, retro_tbel_4108, retro_tbel_4109, retro_tbel_4112, retro_tbel_4132, retro_tbel_4140, retro_tbel_4146, retro_tbel_4152, retro_tbel_4156, retro_tbel_4159, retro_tbel_4178, retro_tbel_4201, retro_tbel_4218, retro_tbel_4232, retro_tbel_424, retro_tbel_4248, retro_tbel_4253, retro_tbel_4264, retro_tbel_4267, retro_tbel_4276, retro_tbel_4281, retro_tbel_4291, retro_tbel_4301, retro_tbel_4303, retro_tbel_4306, retro_tbel_4321, retro_tbel_4328, retro_tbel_4333, retro_tbel_434, retro_tbel_4344, retro_tbel_4349, retro_tbel_4353, retro_tbel_4359, retro_tbel_437, retro_tbel_4375, retro_tbel_4394, retro_tbel_4395, retro_tbel_4396, retro_tbel_4397, retro_tbel_4445, retro_tbel_4446, retro_tbel_4455, retro_tbel_4468, retro_tbel_4476, retro_tbel_4483, retro_tbel_4508, retro_tbel_4517, retro_tbel_452, retro_tbel_4544, retro_tbel_4559, retro_tbel_4576, retro_tbel_4580, retro_tbel_4582, retro_tbel_4591, retro_tbel_4594, retro_tbel_4598, retro_tbel_4603, retro_tbel_4618, retro_tbel_4619, retro_tbel_4633, retro_tbel_4637, retro_tbel_464, retro_tbel_4640, retro_tbel_4662, retro_tbel_469, retro_tbel_4691, retro_tbel_4694, retro_tbel_4701, retro_tbel_4702, retro_tbel_4704, retro_tbel_4709, retro_tbel_4717, retro_tbel_4721, retro_tbel_4722, retro_tbel_4731, retro_tbel_478, retro_tbel_486, retro_tbel_493, retro_tbel_497, retro_tbel_498, retro_tbel_505, retro_tbel_506, retro_tbel_515, retro_tbel_516, retro_tbel_520, retro_tbel_523, retro_tbel_524, retro_tbel_529, retro_tbel_533, retro_tbel_546, retro_tbel_548, retro_tbel_549, retro_tbel_554, retro_tbel_557, retro_tbel_562, retro_tbel_568, retro_tbel_571, retro_tbel_581, retro_tbel_589, retro_tbel_608, retro_tbel_624, retro_tbel_625, retro_tbel_629, retro_tbel_630, retro_tbel_642, retro_tbel_651, retro_tbel_652, retro_tbel_653, retro_tbel_656, retro_tbel_660, retro_tbel_663, retro_tbel_668, retro_tbel_672, retro_tbel_684, retro_tbel_685, retro_tbel_690, retro_tbel_693, retro_tbel_694, retro_tbel_699, retro_tbel_708, retro_tbel_712, retro_tbel_717, retro_tbel_719, retro_tbel_72, retro_tbel_723, retro_tbel_724, retro_tbel_731, retro_tbel_748, retro_tbel_75, retro_tbel_769, retro_tbel_77, retro_tbel_773, retro_tbel_775, retro_tbel_778, retro_tbel_785, retro_tbel_797, retro_tbel_81, retro_tbel_837, retro_tbel_847, retro_tbel_85, retro_tbel_855, retro_tbel_858, retro_tbel_86, retro_tbel_876, retro_tbel_879, retro_tbel_890, retro_tbel_894, retro_tbel_895, retro_tbel_896, retro_tbel_904, retro_tbel_933, retro_tbel_944, retro_tbel_948, retro_tbel_951, retro_tbel_977,
Tarsius syrichta ENSTSYG0000000949222 retrocopies
Tursiops truncatus ENSTTRG000000092687 retrocopies
Vicugna pacos ENSVPAG000000070005 retrocopies



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