RetrogeneDB ID:

retro_ttru_1760

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_90662:14912..15458(-)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FT
Ensembl ID:ENSTTRG00000010405
Aliases:None
Description:Ferritin [Source:UniProtKB/TrEMBL;Acc:B6VQP8]


Retrocopy-Parental alignment summary:






>retro_ttru_1760
ATGATAACCATGTTCCCCTCCCAGGTGCATCAGAACAACCACCAGGACTCAGAGGCCACCATCAACTGCCAGATCAACGT
GGAGCTCTATACCTCCTACGTCTTCCTGTCCATGTCATACTATTTTGACTGTGATGATGTGACTTTGAAGAACTTCACCA
AATGCTTTCTTCTCCAATCTCTTGAGAGGGAACATGCTGAGAAACTGATGAAGCTGCAGAACCAACTGGGTGGCGAAATC
TTCTTTCAGCATATCAAGAAACCAGACCATGATGACTCAGAGAATGGGCTGCATACAATGGAATGTGCACTACACTTGGA
AAAAAGTGTGAATCAGTCGCTACTGGAACTGCACAAGCTGGACACTGACAAAAATGACCACCATTTGTGTGACTTAATTG
AGACTCATTACCTGAAGGAGCAGGTGAAATCCATCAAAGAATTAGGTGACCATGTTAACAACTTGCATAAGATGGGGGCC
ACCAAATGTGGCATGGCAAAGCATTTCTTTGACAAGCACACCCTGGGAAACACTGATAACAAGAGC

ORF - retro_ttru_1760 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 77.05 %
Parental protein coverage: 100. %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalMTTASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSSEEREHAEKL
M.T..PSQV.QN.HQDSEA.IN.QIN.ELY.SYV.LSMSYYFD.DDV.LKNF.K.FL.QS.E.REHAEKL
RetrocopyMITMFPSQVHQNNHQDSEATINCQINVELYTSYVFLSMSYYFDCDDVTLKNFTKCFLLQSLE-REHAEKL
ParentalMKLQNQRGGRIFLQDIKKPDRDDWENGLNAMECALHLEKSVNQSLLELHKLATEKNDPHLCDFLETHYLN
MKLQNQ.GG.IF.Q.IKKPD.DD.ENGL..MECALHLEKSVNQSLLELHKL.T.KND.HLCD..ETHYL.
RetrocopyMKLQNQLGGEIFFQHIKKPDHDDSENGLHTMECALHLEKSVNQSLLELHKLDTDKNDHHLCDLIETHYLK
ParentalEQVKSIKELGDHVTNLRTMGAPESGMAQYLFDKHTLGNSDNES
EQVKSIKELGDHV.NL..MGA...GMA...FDKHTLGN.DN.S
RetrocopyEQVKSIKELGDHVNNLHKMGATKCGMAKHFFDKHTLGNTDNKS

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1760 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1760 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 93 retrocopies.

Species Parental gene accession Retrocopies number
Erinaceus europaeus ENSEEUG000000089478 retrocopies
Latimeria chalumnae ENSLACG000000174261 retrocopy
Tursiops truncatus ENSTTRG0000000125266 retrocopies
Tursiops truncatus ENSTTRG00000010405 18 retrocopies



Copyright © RetrogeneDB 2014-2017