RetrogeneDB ID:

retro_ttru_834

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_3596:12948..13479(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:ENSTTRG00000014032
Aliases:None
Status:KNOWN_PSEUDOGENE
Parental gene
information
Parental gene summary:
Parental gene symbol:FT
Ensembl ID:ENSTTRG00000010405
Aliases:None
Description:Ferritin [Source:UniProtKB/TrEMBL;Acc:B6VQP8]


Retrocopy-Parental alignment summary:






>retro_ttru_834
GCGCCGCCCTCGCAGGTGCGCCAGAGCTACCACCCCGACTGCGAGGCCGCCATCAACAGCCATTTCAACCTGGAGTTCCA
CGCCTCCTTAGTGTGCCTGGCCACGGCCGTTTACCTCGACCGCGACGACGTGGCCTTGAAGCACTTCACCCGGTTCTTCC
TGCGCCGCTCCCGCGAGCACAGCATGCGGGCCCGGTGCCTGATGCGCCTGCAGAACCAGCGCGGGGGCTGCCTCGACTTC
CAAGACATCAGGAGCCCAGTCAGTGTCAACTGGAAGAGCGGCCTCAAGGCCATGAAGTGCACCTTGTTCCTGGAAAAGCT
CATGAACCACAGCCTGCTCCACCTGCACCAGCTGGCCATCGACAAGAGCGACCCCCACCTGCACCACTTCCTGGCAACTC
ACTACCCCAGCCAGCAGGTGGCGTTCATCAGGGAGCTGGAGGGTCATGTCACCAGCCTGAGCATGATGGGGGCCCCGGAC
GTCGACCTGGCAGGGTCCCTCTTTGACAAGCTCACCCTGGGCGACAGTGAC

ORF - retro_ttru_834 Open Reading Frame is conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 57.06 %
Parental protein coverage: 96.72 %
Number of stop codons detected: 0
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSSEEREHAEKLMKL
A.PSQVRQ.YH.D.EAAIN...NLE..AS.V.L....Y.DRDDVALK.F...FL..S.E....A..LM.L
RetrocopyAPPSQVRQSYHPDCEAAINSHFNLEFHASLVCLATAVYLDRDDVALKHFTRFFLRRSREHSMRARCLMRL
ParentalQNQRGGRIFLQDIKKPDRDDWENGLNAMECALHLEKSVNQSLLELHKLATEKNDPHLCDFLETHYLNEQV
QNQRGG....QDI..P....W..GL.AM.C.L.LEK..N.SLL.LH.LA..K.DPHL..FL.THY...QV
RetrocopyQNQRGGCLDFQDIRSPVSVNWKSGLKAMKCTLFLEKLMNHSLLHLHQLAIDKSDPHLHHFLATHYPSQQV
ParentalKSIKELGDHVTNLRTMGAPESGMAQYLFDKHTLGNSD
..I.EL..HVT.L..MGAP....A..LFDK.TLG.SD
RetrocopyAFIRELEGHVTSLSMMGAPDVDLAGSLFDKLTLGDSD

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_834 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_834 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 93 retrocopies.

Species Parental gene accession Retrocopies number
Erinaceus europaeus ENSEEUG000000089478 retrocopies
Latimeria chalumnae ENSLACG000000174261 retrocopy
Tursiops truncatus ENSTTRG0000000125266 retrocopies
Tursiops truncatus ENSTTRG00000010405 18 retrocopies



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