RetrogeneDB ID:

retro_ttru_1881

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:scaffold_96980:66027..66568(+)
Located in intron of:None
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:FT
Ensembl ID:ENSTTRG00000010405
Aliases:None
Description:Ferritin [Source:UniProtKB/TrEMBL;Acc:B6VQP8]


Retrocopy-Parental alignment summary:






>retro_ttru_1881
GCGCCGCCCTCGCAGGTGCGCCAGAACTACCACCCCGACTGCGAGGCCGCCGTCAACAGCCATTTCACCCTGGAGCTCCA
CACCTCCTTCGTGTGCCTGGCCGCGGCCTTTTACCTTGACCGCGACGACGTGGCCTTGAAGCACTTCACCCGGTTCTTCC
TGCGCCGCTCCCACGAGCACAGCGGGCGGGCCCAGGGCCTGATGCGCCTGCAGAACCAGCGCGGGGGCCGCCTCAACTTC
CAAGACATCAGGAAGCCAGGCAGTGACGAGTGGAAGAGCGGCTTCAAGGACATGAAGTGCGCCTTGTTCCTGGAGAAGCT
TGTGAACCACAGCCTGCCGCCACCTGCACCAGCTGGCCACCGACAAGACCGACCCCCACCTGCGCCACTTCCTGGCAATT
CACTACCTCAGCCAGTAGGTGGCGTTCATCAGAGAGTTGGAGGGTCATGTCACCACCCTGAGCATGATGGGGGCCCCGGA
CGTCGACCTGGCAGGGTACCTCTTTGACAAGCTCACCCTGGGCGACAGTGACAAGAAGAAC

ORF - retro_ttru_1881 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 56.91 %
Parental protein coverage: 98.36 %
Number of stop codons detected: 1
Number of frameshifts detected 1


Retrocopy - Parental Gene Alignment:

ParentalASPSQVRQNYHQDSEAAINRQINLELYASYVYLSMSYYFDRDDVALKNFAKYFLHQSSEEREHAEKLMKL
A.PSQVRQNYH.D.EAA.N....LEL..S.V.L....Y.DRDDVALK.F...FL..S.E....A..LM.L
RetrocopyAPPSQVRQNYHPDCEAAVNSHFTLELHTSFVCLAAAFYLDRDDVALKHFTRFFLRRSHEHSGRAQGLMRL
ParentalQNQRGGRIFLQDIKKPDRDDWENGLNAMECALHLEKSVNQSL-LELHKLATEKNDPHLCDFLETHYLNEQ
QNQRGGR...QDI.KP..D.W..G...M.CAL.LEK.VN.SL...LH.LAT.K.DPHL..FL..HYL...
RetrocopyQNQRGGRLNFQDIRKPGSDEWKSGFKDMKCALFLEKLVNHSL>RHLHQLATDKTDPHLRHFLAIHYLSQ*
ParentalVKSIKELGDHVTNLRTMGAPESGMAQYLFDKHTLGNSDNES
V..I.EL..HVT.L..MGAP....A.YLFDK.TLG.SD...
RetrocopyVAFIRELEGHVTTLSMMGAPDVDLAGYLFDKLTLGDSDKKN

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1881 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1881 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 4 parental genes, and 93 retrocopies.

Species Parental gene accession Retrocopies number
Erinaceus europaeus ENSEEUG000000089478 retrocopies
Latimeria chalumnae ENSLACG000000174261 retrocopy
Tursiops truncatus ENSTTRG0000000125266 retrocopies
Tursiops truncatus ENSTTRG00000010405 18 retrocopies



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