>retro_ttru_1819
TACCCATCCAACCTACCTAGTTCCAGGATTGTCATTTGTTTCCACAATGAAGAATTTAATGTCTTGTTTTAGACAGTGTC
CAGTGTCATGACTGTCACTCCACAGTATATCCTTGAAGAAATTATTTTGGTAGATGACATGAGGGAATTTGATGATTTGA
AAGAGAAACTAGACTACCATGTGGAAAATTTTCGGGGAAAGATTAAATTAGTAAGAAACAAAAAGAGAGAGGGACTGATT
CGAGCAAGGCTGATTGGAGCATCGCGTGCTTCAGGGGACGTTCTGATGCTCCTGGATAGCCACTGCAAGGTGACTAAAGT
ATGGCTGGAGCCCGTGCTGAATGCCATTGCTAAGGACCCCAAATGGGGGTGTGTCCTCTGATAGATGCCAGTGATTATGT
GACCCTGGAATACCAGTCCTCTCCTGTTGTCAGGGGAGCTTTCAACTGGTATCTGCAATTTAAACGGGATCGTGATTTCT
CTTATGAGATGGATGGACCAGAAGGACCCACTAGACCTATCTGGTCACCTGCAATGACTGGAGGAAGTTGTGCTATAAAT
AGGCATTATTTTAATGCAGTCGGAAAGTACAAGGGCATAAATCTCTGGGGAGGAGAACATTTGGAACTTTCATTAAGGAC
CTGGATGTATGGAGGCCAACTCTTTACACTCCCCTGCTCTCGAGTAGGACATATTGATAAGCAACACTTTGCAAACCACA
CTGGAATTGTAAAAGCCTTGGTATATAACAATCTCAGACTGGTGCACATTTGGCTAGATGAATAC
ORF - retro_ttru_1819 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: |
83.71 % |
Parental protein coverage: |
58.84 % |
Number of stop codons detected: |
1 |
Number of frameshifts detected |
1 |
Retrocopy - Parental Gene Alignment:
Parental | YPSNLPTASIVICFHNEEFNALFRTVSSVMTLTPQHILEEIILVDDMSEFDDLKEKLGYHLEIFRGKIKL |
| YPSNLP...IVICFHNEEFN.LF.TVSSVMT.TPQ.ILEEIILVDDM.EFDDLKEKL.YH.E.FRGKIKL |
Retrocopy | YPSNLPSSRIVICFHNEEFNVLF*TVSSVMTVTPQYILEEIILVDDMREFDDLKEKLDYHVENFRGKIKL |
|
Parental | IRNKKREGLIRARLIGASRASGDVLVFLDSHCEVNKVWLEPLLNAIAKDPR-MVVCPLIDVIDYVTLEYQ |
| .RNKKREGLIRARLIGASRASGDVL..LDSHC.V.KVWLEP.LNAIAKDP..M.VCPLID..DYVTLEYQ |
Retrocopy | VRNKKREGLIRARLIGASRASGDVLMLLDSHCKVTKVWLEPVLNAIAKDPK<MGVCPLIDASDYVTLEYQ |
|
Parental | PSPVVRGAFNWYLQFKWDHVFSYEMDGPEGPTRPIRSPAMAGGIFAINRHYFNEIGQYDKGMNLWGGENL |
| .SPVVRGAFNWYLQFK.D..FSYEMDGPEGPTRPI.SPAM.GG..AINRHYFN..G.Y.KG.NLWGGE.L |
Retrocopy | SSPVVRGAFNWYLQFKRDRDFSYEMDGPEGPTRPIWSPAMTGGSCAINRHYFNAVGKY-KGINLWGGEHL |
|
Parental | ELSLRIWMCGGQLFILPCSRVGHIDKQHVANHTGIAKALAYNNLRLVHVWLDEY |
| ELSLR.WM.GGQLF.LPCSRVGHIDKQH.ANHTGI.KAL.YNNLRLVH.WLDEY |
Retrocopy | ELSLRTWMYGGQLFTLPCSRVGHIDKQHFANHTGIVKALVYNNLRLVHIWLDEY |
|
Legend:
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_1819 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_1819 was not experimentally validated.
Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to
help section.
Parental genes homology:
Parental genes homology involve
3 parental genes, and
4 retrocopies.