RetrogeneDB ID: | retro_ttru_540 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | GeneScaffold_263:133525..134667(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | PWP1 | ||
Ensembl ID: | ENSTTRG00000011036 | ||
Aliases: | None | ||
Description: | PWP1 homolog (S. cerevisiae) [Source:HGNC Symbol;Acc:17015] |
Percent Identity: | 86.49 % |
Parental protein coverage: | 76.6 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | SKEEVKRLIAEAKEKLQEEGGSDEEETGDPSEDGMQSARTQARPQEPLEDGDPEDDRTLDDDELAEYALD |
...EVKRLIAEAKEKLQE.GGSDEEETGDPSEDGMQ...TQAR.QEPLEDGDPEDD.TLDD.ELAEY.LD | |
Retrocopy | NEKEVKRLIAEAKEKLQEKGGSDEEETGDPSEDGMQHVCTQARLQEPLEDGDPEDDGTLDD-ELAEYDLD |
Parental | KYDEEGDPDTETLGESLLGLTVYGSNDQDPYVTLKDTEQYEREDFLIKPNDNLIVCGRAEQDQCNLEVHV |
KY.EEGDPDTETLGE.LL.LTVYGSNDQDPYVTLKD.EQYERE.FLIKPND.LIVCGRAEQDQCNLEVHV | |
Retrocopy | KYNEEGDPDTETLGEFLLDLTVYGSNDQDPYVTLKDMEQYEREVFLIKPNDILIVCGRAEQDQCNLEVHV |
Parental | YNQEEDSFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDLDIVD-SLEPVFTLGSK |
YNQ.EDSFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWD.DIV..SLEPVFTL..K | |
Retrocopy | YNQ*EDSFYVHHDILLSAYPLSVEWLNFDPSPDDSTGNYIAVGNMTPVIEVWDFDIVE>SLEPVFTLRNK |
Parental | LSKKKKKKGKKNSSADGHTDAVLDLSWNKLIRNVLASASADNTVILWDMSLGKPAASLAIHTDKVQTLQF |
L..........NSSADG.T.AVLDLSWNKLIRNV.ASASA.NTVILWD.SLGKPAASLAIHTDK.QTLQF | |
Retrocopy | LXXXXXXXXXXNSSADGRTNAVLDLSWNKLIRNVPASASA-NTVILWDTSLGKPAASLAIHTDKIQTLQF |
Parental | HPFEAQTLISGSYDKSVALYDCRSPEESHRMWRFS-GQIERVTWNHFSPCHFLASTDDGFVYNLDARSDK |
HPFEAQTLISGS.DKSVALYDCR.PEESH..WRFS.G...RVTWNHFSPCHFLAST.DGFVYNLDA.SDK | |
Retrocopy | HPFEAQTLISGSCDKSVALYDCRGPEESHQLWRFS>GRL-RVTWNHFSPCHFLASTNDGFVYNLDACSDK |
Parental | PIFTLNAHNDEISGLDLSSQIKGCLVTASADKYVK |
PIFTLNAH.DEIS.LDLSSQIK.CLVTASADKYVK | |
Retrocopy | PIFTLNAHRDEISRLDLSSQIKDCLVTASADKYVK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Macaca mulatta | ENSMMUG00000015544 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000031574 | 1 retrocopy | |
Mus musculus | ENSMUSG00000001785 | 2 retrocopies | |
Otolemur garnettii | ENSOGAG00000011940 | 2 retrocopies | |
Rattus norvegicus | ENSRNOG00000005350 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000011036 | 1 retrocopy |
retro_ttru_540 ,
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