RetrogeneDB ID:

retro_ttru_92

Retrocopy
location
Organism:Dolphin (Tursiops truncatus)
Coordinates:GeneScaffold_1193:49388..49751(-)
Located in intron of:ENSTTRG00000005895
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:H3F3A
Ensembl ID:ENSTTRG00000015889
Aliases:None
Description:H3 histone, family 3A [Source:HGNC Symbol;Acc:4764]


Retrocopy-Parental alignment summary:






>retro_ttru_92
ACTGCCCGCAAAGCGACCAGTGGTAAGGCACCGAGGAAGCAACTGGCTACAAAAGCCGCTCGCAAGAGTGCGCCCTCTAC
TGGAGGGGTGAAGAAAACTCATTGTTACAGGCCTGGTACCGGGGCGCTCCGCAAAATCAGACGTTATCAGAAGTCCACTG
AACTTCTGATTTGCAAACTTCCCTTCCAGCGCCTGGTGCGGGAAATTGCTCAGGACTTCAGAACAGATCTGCGCTTCCAG
AGTGCAGCTATTGGCGCTTTGCAGGAGGCAAGTGAGGCCTAGTTGGTTGGCCTTTTTGAAGACCCCAACCTGCATGCTAT
CCATGCCAAACGTGTAACAATTATGCCAAAAGACATCCAGCTA

ORF - retro_ttru_92 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 90.91 %
Parental protein coverage: 88.97 %
Number of stop codons detected: 1
Number of frameshifts detected 0


Retrocopy - Parental Gene Alignment:

ParentalTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIA
TARK.T.GKAPRKQLATKAARKSAPSTGGVKK.H.YRPGT.ALR.IRRYQKSTELLI.KLPFQRLVREIA
RetrocopyTARKATSGKAPRKQLATKAARKSAPSTGGVKKTHCYRPGTGALRKIRRYQKSTELLICKLPFQRLVREIA
ParentalQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL
QDF.TDLRFQSAAIGALQEASEA.LVGLFED.NL.AIHAKRVTIMPKDIQL
RetrocopyQDFRTDLRFQSAAIGALQEASEA*LVGLFEDPNLHAIHAKRVTIMPKDIQL

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






Tursiops truncatus was not studied using RNA-Seq expression data.
Tursiops truncatus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_ttru_92 retrocopy.
Tursiops truncatus was not studied using FANTOM5 data.
retro_ttru_92 was not experimentally validated.

Retrocopy orthology:
Tursiops truncatus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 18 parental genes, and 99 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000145887 retrocopies
Bos taurus ENSBTAG000000245613 retrocopies
Canis familiaris ENSCAFG000000049162 retrocopies
Canis familiaris ENSCAFG000000161194 retrocopies
Erinaceus europaeus ENSEEUG000000137961 retrocopy
Felis catus ENSFCAG000000036174 retrocopies
Felis catus ENSFCAG000000304245 retrocopies
Gadus morhua ENSGMOG000000143061 retrocopy
Macaca mulatta ENSMMUG000000314839 retrocopies
Monodelphis domestica ENSMODG000000059833 retrocopies
Mustela putorius furoENSMPUG000000138113 retrocopies
Nomascus leucogenys ENSNLEG000000015772 retrocopies
Otolemur garnettii ENSOGAG0000002431211 retrocopies
Otolemur garnettii ENSOGAG0000002593314 retrocopies
Pongo abelii ENSPPYG000000086361 retrocopy
Pan troglodytes ENSPTRG0000000204520 retrocopies
Pteropus vampyrus ENSPVAG000000084592 retrocopies
Tursiops truncatus ENSTTRG00000015889 7 retrocopies



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