RetrogeneDB ID:

retro_fcat_1085

Retrocopy
location
Organism:Cat (Felis catus)
Coordinates:C1:39596590..39596948(+)
Located in intron of:ENSFCAG00000011327
Retrocopy
information
Ensembl ID:None
Aliases:None
Status:NOVEL
Parental gene
information
Parental gene summary:
Parental gene symbol:None
Ensembl ID:ENSFCAG00000003617
Aliases:None
Description:None


Retrocopy-Parental alignment summary:






>retro_fcat_1085
GCTCCTAAAAAGCAGACTGCCAGCAAATCCAACACTTCTAAAGCACAGAGGAAGCAACCTGATACAAAAGCTGCTGACAA
GAGTGCACCCCCTACAGGAAGGGTGAAGAAACCTCATTGTTATAGGCCTGGTACTGTGGCCCTTTTTGATTCTCAAACTT
CTTTCCAGCGGCTGGTGCAAGAAATTGCTCAGGATATAAAAATATATTGTGCTTCCAGAGTGCAGCTATTGGTGCTTTGC
AGGAGGCAAGCGAGGCCTATCTGGTAGGCCTTTTTGAAGAACCAGTGTGTGTGCTATCCATGCCAAACGTGTAACATTTA
TGCCAAAAGACATCCAGCTAGCATGCCACATACATGGA

ORF - retro_fcat_1085 Open Reading Frame is not conserved.
Retrocopy - Parental Gene Alignment summary:
Percent Identity: 54.92 %
Parental protein coverage: 86.76 %
Number of stop codons detected: 0
Number of frameshifts detected 2


Retrocopy - Parental Gene Alignment:

ParentalAPRKQLATKA-ARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLI-RKLPFQRLVREIAQD-FKTD
AP.KQ.A.K....K........K......P.T........Y...T..L......FQRLV.EIAQD..K..
RetrocopyAPKKQTASKSNTSKAQRKQPDTKAADKSAPPTGRVKKPHCYRPGTVALFDSQTSFQRLVQEIAQD<YKNI
ParentalLRFQSAAIGALQEASEAYLVGLFED-TNLCAIHAKRVTIMPKDIQLARRIRG
L.FQSAAIGALQEASEAYLVGLFE..T..CAIHAKRVT.MPKDIQLA..I.G
RetrocopyLCFQSAAIGALQEASEAYLVGLFEE<TSVCAIHAKRVTFMPKDIQLACHIHG

Legend:
*Stop codon
>Forward frameshift by one nucleotide
<Reverse frameshift by one nucleotide






(Hint: click retrocopy or parental gene accession number on the plot's legend, to show / hide expression level values)

Expression validation based on RNA-Seq data:
Library Retrocopy expression Parental gene expression
SRP017611_brain 0 .00 RPM 35 .81 RPM
SRP017611_kidney 0 .00 RPM 120 .58 RPM
SRP017611_liver 0 .00 RPM 49 .43 RPM
Felis catus was not studied using ChIP-Seq data.
No EST(s) were mapped for retro_fcat_1085 retrocopy.
Felis catus was not studied using FANTOM5 data.
retro_fcat_1085 was not experimentally validated.

Retrocopy orthology:
Felis catus does not belong to any of the species groups (eutheria, teleost or neognath), studied for retrocopy-based homology. For more information about studied groups, please go to help section.

Parental genes homology:
Parental genes homology involve 30 parental genes, and 183 retrocopies.

Species Parental gene accession Retrocopies number
Ailuropoda melanoleuca ENSAMEG000000145887 retrocopies
Bos taurus ENSBTAG000000245613 retrocopies
Canis familiaris ENSCAFG000000049162 retrocopies
Canis familiaris ENSCAFG000000161194 retrocopies
Dipodomys ordii ENSDORG000000081329 retrocopies
Erinaceus europaeus ENSEEUG000000137961 retrocopy
Felis catus ENSFCAG00000003617 4 retrocopies
Felis catus ENSFCAG000000304245 retrocopies
Homo sapiens ENSG000001630415 retrocopies
Gorilla gorilla ENSGGOG0000002252611 retrocopies
Gadus morhua ENSGMOG000000143061 retrocopy
Macropus eugenii ENSMEUG000000040905 retrocopies
Microcebus murinus ENSMICG000000104696 retrocopies
Macaca mulatta ENSMMUG000000314839 retrocopies
Monodelphis domestica ENSMODG000000059833 retrocopies
Mustela putorius furoENSMPUG000000138113 retrocopies
Mus musculus ENSMUSG0000001655918 retrocopies
Nomascus leucogenys ENSNLEG000000015772 retrocopies
Otolemur garnettii ENSOGAG0000002431211 retrocopies
Otolemur garnettii ENSOGAG0000002593314 retrocopies
Oreochromis niloticus ENSONIG000000158057 retrocopies
Procavia capensis ENSPCAG000000044842 retrocopies
Pongo abelii ENSPPYG0000000016814 retrocopies
Pongo abelii ENSPPYG000000086361 retrocopy
Pan troglodytes ENSPTRG0000000204520 retrocopies
Pteropus vampyrus ENSPVAG000000084592 retrocopies
Rattus norvegicus ENSRNOG000000032204 retrocopies
Sarcophilus harrisii ENSSHAG000000058071 retrocopy
Sus scrofa ENSSSCG000000239712 retrocopies
Tursiops truncatus ENSTTRG000000158897 retrocopies



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