RetrogeneDB ID: | retro_vpac_116 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_1891:444412..444814(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSVPAG00000009975 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 65.94 % |
Parental protein coverage: | 76.88 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RDSFPTDHLSARKVTKLSRMYKSQG-ELQW-PAYREELELERLLWRRRPGERDRRRTGDLRRGERDLL-L |
RDSFP.DH..AR.VTKLS.M....G.ELQW.P.Y.EELELER.LW..RPG.RDRR.T......E.....L | |
Retrocopy | RDSFPADHP*ARRVTKLSWMR*ATGVELQW>PVYGEELELERILW-LRPGKRDRRFTXXXXCAEGNVI<L |
Parental | IR--GGDRRHMGGGGSILLGGLNRLGGGLGQGVSTAVAVISWPSICPPPSICFSAFSASSGFSNSTYA |
.R..GGDRR..GGG.SILLGGLNRL.GG.GQG.STAV.VI.WPSICPPP...FSA..ASS.FSNS.YA | |
Retrocopy | LRLRGGDRRLKGGGSSILLGGLNRLEGGRGQGASTAVTVIAWPSICPPP-MRFSALWASSRFSNSAYA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000004876 | 3 retrocopies | |
Homo sapiens | ENSG00000167970 | 1 retrocopy | |
Tursiops truncatus | ENSTTRG00000008219 | 1 retrocopy | |
Vicugna pacos | ENSVPAG00000009975 | 1 retrocopy |
retro_vpac_116 ,
|