RetrogeneDB ID: | retro_vpac_215 | ||
Retrocopylocation | Organism: | Alpaca (Vicugna pacos) | |
Coordinates: | GeneScaffold_2894:717201..717562(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CNIH4 | ||
Ensembl ID: | ENSVPAG00000012521 | ||
Aliases: | None | ||
Description: | cornichon homolog 4 (Drosophila) [Source:HGNC Symbol;Acc:25013] |
Percent Identity: | 68.29 % |
Parental protein coverage: | 86.23 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | SVYFI-TLSDLECDYINARSC-CSKLNKWVIPEVVGHTIITVLMLISLHWFIFLLNLPVATWNIYRLIMV |
SVYFI.TLSDL.CD..N.RSC.C.KLNKWVIPE..GHT..TV.ML.SLHWF.FLLNLPV.TWN.Y..... | |
Retrocopy | SVYFIITLSDLGCD*FNTRSC>C*KLNKWVIPELTGHTTVTVVMLTSLHWFVFLLNLPVSTWNMYQFVAM |
Parental | PSGNMGVFDPTEIHNRGQLKSHMKEAMIKL-GFHLLCFFMYLYSMILA-LIND |
PSGNMG..DPTEIHN.G.LKS....A..KL.G.HL...FMYLY..ILA.LIND | |
Retrocopy | PSGNMGEPDPTEIHNQGPLKSQTTGAKLKL<GCHLFYVFMYLYRLILA>LIND |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Choloepus hoffmanni | ENSCHOG00000006544 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000008013 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000007310 | 1 retrocopy | |
Dasypus novemcinctus | ENSDNOG00000007093 | 1 retrocopy | |
Homo sapiens | ENSG00000143771 | 1 retrocopy | |
Gorilla gorilla | ENSGGOG00000005708 | 1 retrocopy | |
Myotis lucifugus | ENSMLUG00000003134 | 1 retrocopy | |
Macaca mulatta | ENSMMUG00000009936 | 1 retrocopy | |
Nomascus leucogenys | ENSNLEG00000013549 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000001589 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000000183 | 1 retrocopy | |
Pan troglodytes | ENSPTRG00000002025 | 1 retrocopy | |
Pteropus vampyrus | ENSPVAG00000014034 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000027396 | 2 retrocopies | |
Vicugna pacos | ENSVPAG00000012521 | 2 retrocopies |
retro_vpac_180, retro_vpac_215 ,
|